YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18400416, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECSFQTSLL LFITVSYFVV TESIKPNRMA MKLIHRESVA RLNPNARVPI TPEDHIKHLT  60
   61 DISSARFKYL QNSIDKELGS SNFQVDVEQA IKTSLFLVNF SVGQPPVPQL TIMDTGSSLL 120
  121 WIQCQPCKHC SSDHMIHPVF NPALSSTFVE CSCDDRFCRY APNGHCGSSN KCVYEQVYIS 180
  181 GTGSKGVLAK ERLTFTTPNG NTVVTQPIAF GCGYENGEQL ESHFTGILGL GAKPTSLAVQ 240
  241 LGSKFSYCIG DLANKNYGYN QLVLGEDADI LGDPTPIEFE TENSIYYMNL EGISVGDTQL 300
  301 NIEPVVFKRR GPRTGVILDS GTLYTWLADI AYRELYNEIK SILDPKLERF WFRDFLCYHG 360
  361 RVSEELIGFP VVTFHFAGGA ELAMEATSMF YPLSEPNTFN VFCMSVKPTK EHGGEYKEFT 420
  421 AIGLMAQQYY NIGYDLKEKN IYLQRIDCVQ LDDYSPSK

Type	Start	End	Confidence
Signal Peptide	1	21	0.55
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	458	0.98