YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XPT_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.97
Transmembrane Helix	110	129	0.75
Non-Cytoplasmic	130	138	0.72
Transmembrane Helix	139	161	0.87
Cytoplasmic	162	172	0.68
Transmembrane Helix	173	192	0.80
Non-Cytoplasmic	193	202	0.50
Transmembrane Helix	203	221	0.41
Cytoplasmic	222	226	0.39
Transmembrane Helix	227	246	0.81
Non-Cytoplasmic	247	251	0.46
Transmembrane Helix	252	271	0.74
Cytoplasmic	272	283	0.80
Transmembrane Helix	284	306	0.90
Non-Cytoplasmic	307	318	0.73
Transmembrane Helix	319	342	0.78
Cytoplasmic	343	361	0.63
Transmembrane Helix	362	377	0.50
Non-Cytoplasmic	378	383	0.53
Transmembrane Helix	384	402	0.69
Cytoplasmic	403	417	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLNLSPSL NPGLLHKTRT CQQPTRLSAL LVTNPKPFNH RHPLGLSPIP NLQIRDVSAK  60
   61 PLLSLTNPES SSGFSRKPRS IAAVGSSDSN PDEKSDLGEA EKKEKKAKTL QLGIVFGLWY 120
  121 FQNIVFNIFN KKALNVFPYP WLLASFQLFA GSIWMLVLWS FKLYPCPKIS KPFIIALLGP 180
  181 ALFHTIGHIS ACVSFSKVAV SFTHVIKSAE PVFSVIFSSL LGDSYPLAVW LSILPIVMGC 240
  241 SLAAVTEVSF NLGGLSGAMI SNVGFVLRNI YSKRSLQSFK EIDGLNLYGC ISILSLLYLF 300
  301 PVAIFVEGSH WVPGYHKAIA SVGTPSTFYF WVLLSGVFYH LYNQSSYQAL DEISPLTFSV 360
  361 GNTMKRVVVI ISTVLVFRNP VRPLNALGSA IAIFGTFLYS QATAKKKKIE VGGDKKN