YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSLD5_ARATH
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSAASQSP SPVTITVTPC KGSGDRSLGL TSPIPRASVI TNQNSPLSSR ATRRTSISSG  60
   61 NRRSNGDEGR YCSMSVEDLT AETTNSECVL SYTVHIPPTP DHQTVFASQE SEEDEMLKGN 120
  121 SNQKSFLSGT IFTGGFKSVT RGHVIDCSMD RADPEKKSGQ ICWLKGCDEK VVHGRCECGF 180
  181 RICRDCYFDC ITSGGGNCPG CKEPYRDIND DPETEEEDEE DEAKPLPQMG ESKLDKRLSV 240
  241 VKSFKAQNQA GDFDHTRWLF ETKGTYGYGN AVWPKDGYGI GSGGGGNGYE TPPEFGERSK 300
  301 RPLTRKVSVS AAIISPYRLL IALRLVALGL FLTWRVRHPN REAMWLWGMS TTCELWFALS 360
  361 WLLDQLPKLC PVNRLTDLGV LKERFESPNL RNPKGRSDLP GIDVFVSTAD PEKEPPLVTA 420
  421 NTILSILAVD YPVEKLACYL SDDGGALLTF EALAQTASFA STWVPFCRKH NIEPRNPEAY 480
  481 FGQKRNFLKN KVRLDFVRER RRVKREYDEF KVRINSLPEA IRRRSDAYNV HEELRAKKKQ 540
  541 MEMMMGNNPQ ETVIVPKATW MSDGSHWPGT WSSGETDNSR GDHAGIIQAM LAPPNAEPVY 600
  601 GAEADAENLI DTTDVDIRLP MLVYVSREKR PGYDHNKKAG AMNALVRTSA IMSNGPFILN 660
  661 LDCDHYIYNS MALREGMCFM LDRGGDRICY VQFPQRFEGI DPNDRYANHN TVFFDVSMRA 720
  721 LDGLQGPMYV GTGCIFRRTA LYGFSPPRAT EHHGWLGRRK VKISLRRPKA MMKKDDEVSL 780
  781 PINGEYNEEE NDDGDIESLL LPKRFGNSNS FVASIPVAEY QGRLIQDLQG KGKNSRPAGS 840
  841 LAVPREPLDA ATVAEAISVI SCFYEDKTEW GKRVGWIYGS VTEDVVTGYR MHNRGWRSIY 900
  901 CVTKRDAFRG TAPINLTDRL HQVLRWATGS VEIFFSRNNA IFATRRMKFL QRVAYFNVGM 960
  961 YPFTSLFLIV YCILPAISLF SGQFIVQSLD ITFLIYLLSI TLTLCMLSLL EIKWSGITLH1020
 1021 EWWRNEQFWV IGGTSAHPAA VLQGLLKVIA GVDISFTLTS KSSAPEDGDD EFADLYVVKW1080
 1081 SFLMVPPLTI MMVNMIAIAV GLARTLYSPF PQWSKLVGGV FFSFWVLCHL YPFAKGLMGR1140
 1141 RGRVPTIVFV WSGLLSIIVS LLWVYINPPS GKQDYMQFQF P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle