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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT12_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPKPFFLCI IFLLFCSSSS EILQKQTYIV QLHPNSETAK TFASKFDWHL SFLQEAVLGV  60
   61 EEEEEEPSSR LLYSYGSAIE GFAAQLTESE AEILRYSPEV VAVRPDHVLQ VQTTYSYKFL 120
  121 GLDGFGNSGV WSKSRFGQGT IIGVLDTGVW PESPSFDDTG MPSIPRKWKG ICQEGESFSS 180
  181 SSCNRKLIGA RFFIRGHRVA NSPEESPNMP REYISARDST GHGTHTASTV GGSSVSMANV 240
  241 LGNGAGVARG MAPGAHIAVY KVCWFNGCYS SDILAAIDVA IQDKVDVLSL SLGGFPIPLY 300
  301 DDTIAIGTFR AMERGISVIC AAGNNGPIES SVANTAPWVS TIGAGTLDRR FPAVVRLANG 360
  361 KLLYGESLYP GKGIKNAGRE VEVIYVTGGD KGSEFCLRGS LPREEIRGKM VICDRGVNGR 420
  421 SEKGEAVKEA GGVAMILANT EINQEEDSID VHLLPATLIG YTESVLLKAY VNATVKPKAR 480
  481 IIFGGTVIGR SRAPEVAQFS ARGPSLANPS ILKPDMIAPG VNIIAAWPQN LGPTGLPYDS 540
  541 RRVNFTVMSG TSMSCPHVSG ITALIRSAYP NWSPAAIKSA LMTTADLYDR QGKAIKDGNK 600
  601 PAGVFAIGAG HVNPQKAINP GLVYNIQPVD YITYLCTLGF TRSDILAITH KNVSCNGILR 660
  661 KNPGFSLNYP SIAVIFKRGK TTEMITRRVT NVGSPNSIYS VNVKAPEGIK VIVNPKRLVF 720
  721 KHVDQTLSYR VWFVLKKKNR GGKVASFAQG QLTWVNSHNL MQRVRSPISV TLKTN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle