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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PSD1A_ARATH
Protein type: Transmembrane
Type Confidence: 0.44
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPMVSSAG GLLAMLNEPH PVLKLHALSN LNNLVDQFWP EISTSVPIIE SLYEDEEFDL  60
   61 HQRQLAALLV SKVFYYLGEL NDSLSYALGA GPLFDVSEDS DYVHTLLAKA IDEYASLRSK 120
  121 AVESNEMVDI DPRLEAIVER MLGKCISDGK YQQAMGIAIE CRRLDKLEEA IIKSDNVQGT 180
  181 LSYCINVSHS FVNRREYRHE VLSLLVKVYQ KLPSPDYLSI CQCLMFLDEP QGVASILEKL 240
  241 LRSENKDDAL LALQIAFDLV ENEHQAFLLS VRDRLPAPKT RAVEATQAVE TTIAPNENPS 300
  301 GDVQMADETP AQTIVHETDP VDATYAERLT KIKGILSGET SIQLTLQFLY SHNKSDLLIL 360
  361 KTIKQSVEMR NSVCHSATIY ANAIMHAGTT VDTFLRENLD WLSRATNWAK FSATAGLGVI 420
  421 HRGHLQQGRS LMAPYLPQGG AGGGGSPYSE GGALYALGLI HANHGEGIKQ FLRDSLRSTN 480
  481 VEVIQHGACL GLGLSALGTA DEEIYDDVKS VLYTDSAVAG EAAGISMGLL LVGTATEKAS 540
  541 EMLAYAHETQ HEKIIRGLAL GIALTVYGRE EGADTLIEQM TRDQDPIIRY GGMYALALAY 600
  601 SGTANNKAIR QLLHFAVSDV SDDVRRTAVL ALGFVLYSDP EQTPRIVSLL SESYNPHVRY 660
  661 GAALAVGISC AGTGLSEAIS LLEPLTSDVV DFVRQGALIA MAMVMVQISE ASDSRVGVFR 720
  721 RQLEKIILDK HEDTMSKMGA ILASGILDAG GRNVTIRLLS KTKHDKVTAV IGLAVFSQFW 780
  781 YWYPLIYFIS LAFSPTAFIG LNYDLKVPKF EFMSHAKPSL FEYPKPTTVP TANTAVKLPT 840
  841 AVLSTSVKAK ARAKKEAEQK AIAEKTSGPE KPVNESGSGK GKASTEKEGD SMQVDSPAAV 900
  901 EKKAPEPEPA FEILVNPARV VPAQEKYIKL LDDSRYVPVK LAPSGFVLLK DLREHEPEVL 960
  961 SLTDAPTSTA SPATGTAAAA QGTPASAMAV DDEPQPPQAF EYAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle