YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.88
Transmembrane Helix	16	35	0.91
Non-Cytoplasmic	36	53	0.88
Transmembrane Helix	54	75	0.89
Cytoplasmic	76	84	0.81
Transmembrane Helix	85	104	0.94
Non-Cytoplasmic	105	109	0.85
Transmembrane Helix	110	133	0.86
Cytoplasmic	134	142	0.84
Transmembrane Helix	143	164	0.90
Non-Cytoplasmic	165	172	0.82
Transmembrane Helix	173	194	0.93
Cytoplasmic	195	274	0.97
Transmembrane Helix	275	296	0.69
Non-Cytoplasmic	297	312	0.76
Transmembrane Helix	313	335	0.90
Cytoplasmic	336	342	0.80
Transmembrane Helix	343	365	0.92
Non-Cytoplasmic	366	372	0.74
Transmembrane Helix	373	401	0.79
Cytoplasmic	402	418	0.67
Transmembrane Helix	419	437	0.59
Non-Cytoplasmic	438	438	0.46
Transmembrane Helix	439	464	0.80
Cytoplasmic	465	493	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQISGEKP AGVNRFALQC AIVASIVSII FGYDTGVMSG AMVFIEEDLK TNDVQIEVLT  60
   61 GILNLCALVG SLLAGRTSDI IGRRYTIVLA SILFMLGSIL MGWGPNYPVL LSGRCTAGLG 120
  121 VGFALMVAPV YSAEIATASH RGLLASLPHL CISIGILLGY IVNYFFSKLP MHIGWRLMLG 180
  181 IAAVPSLVLA FGILKMPESP RWLIMQGRLK EGKEILELVS NSPEEAELRF QDIKAAAGID 240
  241 PKCVDDVVKM EGKKTHGEGV WKELILRPTP AVRRVLLTAL GIHFFQHASG IEAVLLYGPR 300
  301 IFKKAGITTK DKLFLVTIGV GIMKTTFIFT ATLLLDKVGR RKLLLTSVGG MVIALTMLGF 360
  361 GLTMAQNAGG KLAWALVLSI VAAYSFVAFF SIGLGPITWV YSSEVFPLKL RAQGASLGVA 420
  421 VNRVMNATVS MSFLSLTSAI TTGGAFFMFA GVAAVAWNFF FFLLPETKGK SLEEIEALFQ 480
  481 RDGDKVRGEN GAA