YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLST2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.99
Transmembrane Helix	50	71	0.90
Non-Cytoplasmic	72	89	0.95
Transmembrane Helix	90	113	0.89
Cytoplasmic	114	121	0.86
Transmembrane Helix	122	144	0.85
Non-Cytoplasmic	145	150	0.57
Transmembrane Helix	151	169	0.90
Cytoplasmic	170	180	0.70
Transmembrane Helix	181	202	0.90
Non-Cytoplasmic	203	210	0.72
Transmembrane Helix	211	231	0.92
Cytoplasmic	232	292	0.95
Transmembrane Helix	293	315	0.87
Non-Cytoplasmic	316	328	0.84
Transmembrane Helix	329	349	0.92
Cytoplasmic	350	355	0.94
Transmembrane Helix	356	376	0.93
Non-Cytoplasmic	377	384	0.71
Transmembrane Helix	385	412	0.78
Cytoplasmic	413	423	0.90
Transmembrane Helix	424	446	0.90
Non-Cytoplasmic	447	453	0.80
Transmembrane Helix	454	475	0.86
Cytoplasmic	476	493	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGLQRETSS MYKRTSSRDY SPMIDVEDSS GLLENDVDNE METTNPSWKC SLPHVLVATI  60
   61 SSFLFGYHLG VVNEPLESIS SDLGFSGDTL AEGLVVSVCL GGAFLGSLFS GGVADGFGRR 120
  121 RAFQICALPM ILGAFVSGVS NSLAVMLLGR FLVGTGMGLG PPVAALYVTE VSPAFVRGTY 180
  181 GSFIQIATCL GLMAALFIGI PVHNITGWWR VCFWLSTIPA ALLALGMFLC AESPQWLFKQ 240
  241 GKIAEAEAEF ERLLGGSHVK TAMAELYKLD LDKTDEPDVV SLSELLYGRH SRVVFIGSTL 300
  301 FALQQLSGIN AVFYFSSTVF KSAGVPSDLG NIFVGVSNLL GSVIAMVLMD KVGRKLLLLW 360
  361 SFIGMAAAMA LQVGATSSYL PHFSALCLSV GGTLVFVLTF ALGAGPVPGL LLPEIFPSRI 420
  421 RAKAMAFCMS VHWVINFFVG LLFLRLLEKL GPRLLYSMFS TFCLMAVMFV KRNVIETKGK 480
  481 TLQEIEISLL AKP