YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHT11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.93
Transmembrane Helix	19	39	0.86
Non-Cytoplasmic	40	68	0.89
Transmembrane Helix	69	91	0.91
Cytoplasmic	92	99	0.93
Transmembrane Helix	100	120	0.94
Non-Cytoplasmic	121	129	0.74
Transmembrane Helix	130	151	0.85
Cytoplasmic	152	162	0.86
Transmembrane Helix	163	186	0.90
Non-Cytoplasmic	187	212	0.94
Transmembrane Helix	213	232	0.96
Cytoplasmic	233	293	0.98
Transmembrane Helix	294	312	0.85
Non-Cytoplasmic	313	342	0.82
Transmembrane Helix	343	366	0.83
Cytoplasmic	367	375	0.71
Transmembrane Helix	376	396	0.91
Non-Cytoplasmic	397	404	0.77
Transmembrane Helix	405	427	0.86
Cytoplasmic	428	439	0.73
Transmembrane Helix	440	463	0.85
Non-Cytoplasmic	464	482	0.79
Transmembrane Helix	483	502	0.93
Cytoplasmic	503	524	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEQQLGVLK ALDVAKTQLY HFTAIVIAGM GFFTDAYDLF CVSLVTKLLG RIYYFNPESA  60
   61 KPGSLPPHVA AAVNGVALCG TLSGQLFFGW LGDKLGRKKV YGLTLVMMIL CSVASGLSFG 120
  121 HEAKGVMTTL CFFRFWLGFG IGGDYPLSAT IMSEYANKKT RGAFIAAVFA MQGVGILAGG 180
  181 FVALAVSSIF DKKFPAPTYA VNRALSTPPQ VDYIWRIIVM FGALPAALTY YWRMKMPETA 240
  241 RYTALVAKNI KQATADMSKV LQTDIELEER VEDDVKDPKQ NYGLFSKEFL RRHGLHLLGT 300
  301 TSTWFLLDIA FYSQNLFQKD IFSAIGWIPK AATMNATHEV FRIARAQTLI ALCSTVPGYW 360
  361 FTVAFIDTIG RFKIQLNGFF MMTVFMFAIA FPYNHWIKPE NRIGFVVMYS LTFFFANFGP 420
  421 NATTFIVPAE IFPARLRSTC HGISAAAGKA GAIVGAFGFL YAAQSQDKAK VDAGYPPGIG 480
  481 VKNSLIMLGV LNFIGMLFTF LVPEPKGKSL EELSGEAEVS HDEK