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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT38_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSCRTLIFV AIILNGLSTF VAHAGAESKV HIVYLGEKQH DDPEFVTESH HRMLWSLLGS  60
   61 KEDAHSSMVH SYRHGFSGFA AKLTKSQAKK LADLPEVVHV TPDSFYQLDT TRTWDYLGLS 120
  121 VANPKNLLND TNMGEEVIIG IVDSGVWPES EVFNDNGIGP VPSHWKGGCV SGENFTSSQC 180
  181 NKKLIGAKYF INGFLATHES FNSTESLDFI SPRDRSGHGT HVATIAGGSY VPSISYKGLA 240
  241 GGTVRGGAPR ARIAMYKACW YLDRFDINTC SSADILKAMD EAMHDGVDVL SLSIGYRFPY 300
  301 FPETDVRAVI ATGAFHAVLK GITVVCSGGN SGPAAQTVGN TAPWILTVAA TTLDRSFPTP 360
  361 ITLGNNKLIL GQAMYTGPEL GFTSLVYPEN PGNSNESFSG DCELLFFNSN HTMAGKVVLC 420
  421 FTTSTRYITV SSAVSYVKEA GGLGVIVARN PGDNLSPCED DFPCVAVDYE LGTDILLYIR 480
  481 STGLPVVKIQ PSKTLVGQPV GTKVADFSSR GPNSIEPAIL KPDIAAPGVS ILAATTTNKT 540
  541 FNDRGFIFLS GTSMAAPTIS GVVALLKALH RDWSPAAIRS AIVTTAWRTD PFGEQIFAEG 600
  601 SPRKLADPFD YGGGLVNPEK AAKPGLVYDL GLEDYVLYMC SVGYNETSIS QLVGKGTVCS 660
  661 NPKPSVLDFN LPSITIPNLK DEVTLTRTLT NVGQLESVYK VVIEPPIGIQ VTVTPETLLF 720
  721 NSTTKRVSFK VKVSTTHKIN TGYFFGSLTW SDSLHNVTIP LSVRTQILQN YYDEN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle