YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANTL3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.97
Transmembrane Helix	43	63	0.92
Non-Cytoplasmic	64	68	0.84
Transmembrane Helix	69	90	0.95
Cytoplasmic	91	127	0.79
Transmembrane Helix	128	148	0.85
Non-Cytoplasmic	149	157	0.61
Transmembrane Helix	158	178	0.81
Cytoplasmic	179	189	0.50
Transmembrane Helix	190	212	0.73
Non-Cytoplasmic	213	226	0.71
Transmembrane Helix	227	247	0.85
Cytoplasmic	248	261	0.76
Transmembrane Helix	262	284	0.89
Non-Cytoplasmic	285	296	0.81
Transmembrane Helix	297	320	0.82
Cytoplasmic	321	339	0.84
Transmembrane Helix	340	358	0.93
Non-Cytoplasmic	359	365	0.67
Transmembrane Helix	366	385	0.95
Cytoplasmic	386	396	0.78
Transmembrane Helix	397	419	0.90
Non-Cytoplasmic	420	427	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYDQEAGSS SHSLPSGSSS HSLPPTEDTP LLGPRTLSSQ PKTFANVFIA IVGAGVLGLP  60
   61 YTFKKTGWLL GLLTLLFVSS LTFFCMMLLV HTRRKLESLS GFNSITSFGD LGESVCGPAG 120
  121 RLVVDVMLVL SQSGFCVSYL IFVATTMANL LSRGTEHILG LDAASIYLWG CFPFQLGLNS 180
  181 IPSLTHLAPL SIFADIVDVA ATLVVMVQDV FIFLKRRPPL RVFGGVSVFF YGLGVAVYAF 240
  241 EGIGMVLPLE LEAKYKDKFG RALGLAMGLI SIMYGAFGLL GYMAYGEETK DIITTNLGTG 300
  301 VVSTLVQLGL AINLFFTFPL MMQPVYEVVE RRLCSSRYSV WVRWATVLVV TLVALLVPNF 360
  361 ADFLSLVGSS VCVVLGFVLP SLFHLQAFKN ELSITRIVVD VLVFLIGVMI AITGTWTAVH 420
  421 EILTSKA