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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CRK40_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKCSALMIF LSSSLLLVLQ TLHVVNAVKC FGNSFNGNSS TFAQNRQKLF PTLADKVIIN  60
   61 DGFYNASLGQ DPDKVYALVS CARGYDQDAC YNCVQSLTQN TLTDCRSRRD SFIWGGNDDV 120
  121 TCLVRSSNQS TFGSVQLKPP VVWPSPDTIE SSKNITLFKQ QWEEMVNRTL EAATKAEGSS 180
  181 VLKYYKAEKA GFTEFPDVYM LMQCTPDLSS RDCKQCLGDC VMYFRKDYMG RKGGMASLPS 240
  241 CYFRWDLYSF HNAFDNVTRV PAPPPRPHAQ EKESCITVKK GKSIGYGGII AIVVVFTFIN 300
  301 LLVFIGFIKV YARRGKLNNV GSAEYSDSDG QFMLRFDLGM IVMATDDFSS ENTLGQGGFG 360
  361 TVYKGTFPNG QEVAVKRLTK GSGQGDMEFK NEVSLLTRLQ HKNLVKLLGF CNEGDEEILV 420
  421 YEFVPNSSLD HFIFDEDKRS LLTWEVRFRI IEGIARGLLY LHEDSQLKII HRDLKASNIL 480
  481 LDAEMNPKVA DFGTARLFDS DETRAETKRI AGTRGYMAPE YLNHGQISAK SDVYSFGVML 540
  541 LEMISGERNN SFEGEGLAAF AWKRWVEGKP EIIIDPFLIE NPRNEIIKLI QIGLLCVQEN 600
  601 STKRPTMSSV IIWLGSETII IPLPKAPAFT WIRSQSESGA MSLSDDVFTE LSCR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle