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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SD11_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIHSLFSL SLFLISSSLS VALDYNVITP KEFLKDGDTL SSPDQVFQLG FFSLDQEEQP  60
   61 QHRFLGLWYM EPFAVVWVAN RNNPLYGTSG FLNLSSLGDL QLFDGEHKAL WSSSSSSTKA 120
  121 SKTANNPLLK ISCSGNLISS DGEEAVLWQS FDYPMNTILA GMKLGKNFKT QMEWSLSSWK 180
  181 TLKDPSPGDF TLSLDTRGLP QLILRKNGDS SYSYRLGSWN GLSFTGAPAM GRENSLFDYK 240
  241 FTSSAQEVNY SWTPRHRIVS RLVLNNTGKL HRFIQSKQNQ WILANTAPED ECDYYSICGA 300
  301 YAVCGINSKN TPSCSCLQGF KPKSGRKWNI SRGAYGCVHE IPTNCEKKDA FVKFPGLKLP 360
  361 DTSWSWYDAK NEMTLEDCKI KCSSNCSCTA YANTDIREGG KGCLLWFGDL VDMREYSSFG 420
  421 QDVYIRMGFA KIEFKGREVV GMVVGSVVAI AVVLVVVFAC FRKKIMKRYR GENFRKGIEE 480
  481 EDLDLPIFDR KTISIATDDF SYVNFLGRGG FGPVYKGKLE DGQEIAVKRL SANSGQGVEE 540
  541 FKNEVKLIAK LQHRNLVRLL GCCIQGEECM LIYEYMPNKS LDFFIFDERR STELDWKKRM 600
  601 NIINGVARGI LYLHQDSRLR IIHRDLKAGN VLLDNDMNPK ISDFGLAKSF GGDQSESSTN 660
  661 RVVGTYGYMP PEYAIDGHFS VKSDVFSFGV LVLEIITGKT NRGFRHADHD LNLLGHVWKM 720
  721 WVEDREIEVP EEEWLEETSV IPEVLRCIHV ALLCVQQKPE DRPTMASVVL MFGSDSSLPH 780
  781 PTQPGFFTNR NVPDISSSLS LRSQNEVSIT MLQGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle