YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	42	0.94
Non-Cytoplasmic	43	86	0.96
Transmembrane Helix	87	109	0.87
Cytoplasmic	110	117	0.80
Transmembrane Helix	118	136	0.93
Non-Cytoplasmic	137	141	0.77
Transmembrane Helix	142	164	0.87
Cytoplasmic	165	173	0.86
Transmembrane Helix	174	194	0.89
Non-Cytoplasmic	195	204	0.77
Transmembrane Helix	205	226	0.89
Cytoplasmic	227	288	0.97
Transmembrane Helix	289	311	0.90
Non-Cytoplasmic	312	325	0.79
Transmembrane Helix	326	347	0.91
Cytoplasmic	348	354	0.89
Transmembrane Helix	355	377	0.92
Non-Cytoplasmic	378	387	0.84
Transmembrane Helix	388	409	0.91
Cytoplasmic	410	424	0.80
Transmembrane Helix	425	446	0.87
Non-Cytoplasmic	447	454	0.79
Transmembrane Helix	455	476	0.92
Cytoplasmic	477	514	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAEEARKEA MAKSVSGGKI TYFVVASCVM AAMGGVIFGY DIGVSGGVMS MGPFLKRFFP  60
   61 KVYKLQEEDR RRRGNSNNHY CLFNSQLLTS FTSSLYVSGL IATLLASSVT RSWGRKPSIF 120
  121 LGGVSFLAGA ALGGSAQNVA MLIIARLLLG VGVGFANQSV PLYLSEMAPA KYRGAISNGF 180
  181 QLCIGIGFLS ANVINYETQN IKHGWRISLA TAAIPASILT LGSLFLPETP NSIIQTTGDV 240
  241 HKTELMLRRV RGTNDVQDEL TDLVEASSGS DTDSNAFLKL LQRKYRPELV MALVIPFFQQ 300
  301 VTGINVVAFY APVLYRTVGF GESGSLMSTL VTGIVGTSST LLSMLVVDRI GRKTLFLIGG 360
  361 LQMLVSQVTI GVIVMVADVH DGVIKEGYGY AVVVLVCVYV AGFGWSWGPL GWLVPSEIFP 420
  421 LEIRSVAQSV TVAVSFVFTF AVAQSAPPML CKFRAGIFFF YGGWLVVMTV AVQLFLPETK 480
  481 NVPIEKVVGL WEKHWFWRRM TSKRDIQETT ILSH