YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	60	0.77
Transmembrane Helix	61	80	0.84
Cytoplasmic	81	89	0.80
Transmembrane Helix	90	109	0.94
Non-Cytoplasmic	110	114	0.85
Transmembrane Helix	115	137	0.91
Cytoplasmic	138	146	0.85
Transmembrane Helix	147	167	0.90
Non-Cytoplasmic	168	177	0.77
Transmembrane Helix	178	199	0.90
Cytoplasmic	200	275	0.96
Transmembrane Helix	276	296	0.82
Non-Cytoplasmic	297	317	0.83
Transmembrane Helix	318	340	0.92
Cytoplasmic	341	347	0.85
Transmembrane Helix	348	370	0.90
Non-Cytoplasmic	371	383	0.64
Transmembrane Helix	384	405	0.88
Cytoplasmic	406	417	0.76
Transmembrane Helix	418	438	0.50
Non-Cytoplasmic	439	442	0.45
Transmembrane Helix	443	466	0.88
Cytoplasmic	467	508	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHADGHNFP GSDPNPHMNK FAFGCAIVAS IISIIFGYDT GVMSGAQIFI RDDLKINDTQ  60
   61 IEVLAGILNL CALVGSLTAG KTSDVIGRRY TIALSAVIFL VGSVLMGYGP NYPVLMVGRC 120
  121 IAGVGVGFAL MIAPVYSAEI SSASHRGFLT SLPELCISLG ILLGYVSNYC FGKLTLKLGW 180
  181 RLMLGIAAFP SLILAFGITR MPESPRWLVM QGRLEEAKKI MVLVSNTEEE AEERFRDILT 240
  241 AAEVDVTEIK EVGGGVKKKN HGKSVWRELV IKPRPAVRLI LIAAVGIHFF EHATGIEAVV 300
  301 LYSPRIFKKA GVVSKDKLLL ATVGVGLTKA FFIIIATFLL DKVGRRKLLL TSTGGMVFAL 360
  361 TSLAVSLTMV QRFGRLAWAL SLSIVSTYAF VAFFSIGLGP ITWVYSSEIF PLRLRAQGAS 420
  421 IGVAVNRIMN ATVSMSFLSM TKAITTGGVF FVFAGIAVAA WWFFFFMLPE TKGLPLEEME 480
  481 KLFGGGGPRG DRDGLEIQTK TISIGGFS