YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PSYR1_ARATH
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.25
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDEKMRSKS IGPFVRQVKP LSPHMVLFVL LYVLSISVFF LTVSEAVCNL QDRDSLLWFS  60
   61 GNVSSPVSPL HWNSSIDCCS WEGISCDKSP ENRVTSIILS SRGLSGNLPS SVLDLQRLSR 120
  121 LDLSHNRLSG PLPPGFLSAL DQLLVLDLSY NSFKGELPLQ QSFGNGSNGI FPIQTVDLSS 180
  181 NLLEGEILSS SVFLQGAFNL TSFNVSNNSF TGSIPSFMCT ASPQLTKLDF SYNDFSGDLS 240
  241 QELSRCSRLS VLRAGFNNLS GEIPKEIYNL PELEQLFLPV NRLSGKIDNG ITRLTKLTLL 300
  301 ELYSNHIEGE IPKDIGKLSK LSSLQLHVNN LMGSIPVSLA NCTKLVKLNL RVNQLGGTLS 360
  361 AIDFSRFQSL SILDLGNNSF TGEFPSTVYS CKMMTAMRFA GNKLTGQISP QVLELESLSF 420
  421 FTFSDNKMTN LTGALSILQG CKKLSTLIMA KNFYDETVPS NKDFLRSDGF PSLQIFGIGA 480
  481 CRLTGEIPAW LIKLQRVEVM DLSMNRFVGT IPGWLGTLPD LFYLDLSDNF LTGELPKELF 540
  541 QLRALMSQKA YDATERNYLE LPVFVNPNNV TTNQQYNQLS SLPPTIYIKR NNLTGTIPVE 600
  601 VGQLKVLHIL ELLGNNFSGS IPDELSNLTN LERLDLSNNN LSGRIPWSLT GLHFLSYFNV 660
  661 ANNTLSGPIP TGTQFDTFPK ANFEGNPLLC GGVLLTSCDP TQHSTTKMGK GKVNRTLVLG 720
  721 LVLGLFFGVS LILVLLALLV LSKRRVNPGD SENAELEINS NGSYSEVPPG SDKDISLVLL 780
  781 FGNSRYEVKD LTIFELLKAT DNFSQANIIG CGGFGLVYKA TLDNGTKLAV KKLTGDYGMM 840
  841 EKEFKAEVEV LSRAKHENLV ALQGYCVHDS ARILIYSFME NGSLDYWLHE NPEGPAQLDW 900
  901 PKRLNIMRGA SSGLAYMHQI CEPHIVHRDI KSSNILLDGN FKAYVADFGL SRLILPYRTH 960
  961 VTTELVGTLG YIPPEYGQAW VATLRGDVYS FGVVMLELLT GKRPMEVFRP KMSRELVAWV1020
 1021 HTMKRDGKPE EVFDTLLRES GNEEAMLRVL DIACMCVNQN PMKRPNIQQV VDWLKNIEAE1080
 1081 KNQNNREEPE EEEET

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle