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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PEPR1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLGGLFKI LLLFFCLFLS THIISVSCLN SDGLTLLSLL KHLDRVPPQV TSTWKINASE  60
   61 ATPCNWFGIT CDDSKNVASL NFTRSRVSGQ LGPEIGELKS LQILDLSTNN FSGTIPSTLG 120
  121 NCTKLATLDL SENGFSDKIP DTLDSLKRLE VLYLYINFLT GELPESLFRI PKLQVLYLDY 180
  181 NNLTGPIPQS IGDAKELVEL SMYANQFSGN IPESIGNSSS LQILYLHRNK LVGSLPESLN 240
  241 LLGNLTTLFV GNNSLQGPVR FGSPNCKNLL TLDLSYNEFE GGVPPALGNC SSLDALVIVS 300
  301 GNLSGTIPSS LGMLKNLTIL NLSENRLSGS IPAELGNCSS LNLLKLNDNQ LVGGIPSALG 360
  361 KLRKLESLEL FENRFSGEIP IEIWKSQSLT QLLVYQNNLT GELPVEMTEM KKLKIATLFN 420
  421 NSFYGAIPPG LGVNSSLEEV DFIGNKLTGE IPPNLCHGRK LRILNLGSNL LHGTIPASIG 480
  481 HCKTIRRFIL RENNLSGLLP EFSQDHSLSF LDFNSNNFEG PIPGSLGSCK NLSSINLSRN 540
  541 RFTGQIPPQL GNLQNLGYMN LSRNLLEGSL PAQLSNCVSL ERFDVGFNSL NGSVPSNFSN 600
  601 WKGLTTLVLS ENRFSGGIPQ FLPELKKLST LQIARNAFGG EIPSSIGLIE DLIYDLDLSG 660
  661 NGLTGEIPAK LGDLIKLTRL NISNNNLTGS LSVLKGLTSL LHVDVSNNQF TGPIPDNLEG 720
  721 QLLSEPSSFS GNPNLCIPHS FSASNNSRSA LKYCKDQSKS RKSGLSTWQI VLIAVLSSLL 780
  781 VLVVVLALVF ICLRRRKGRP EKDAYVFTQE EGPSLLLNKV LAATDNLNEK YTIGRGAHGI 840
  841 VYRASLGSGK VYAVKRLVFA SHIRANQSMM REIDTIGKVR HRNLIKLEGF WLRKDDGLML 900
  901 YRYMPKGSLY DVLHGVSPKE NVLDWSARYN VALGVAHGLA YLHYDCHPPI VHRDIKPENI 960
  961 LMDSDLEPHI GDFGLARLLD DSTVSTATVT GTTGYIAPEN AFKTVRGRES DVYSYGVVLL1020
 1021 ELVTRKRAVD KSFPESTDIV SWVRSALSSS NNNVEDMVTT IVDPILVDEL LDSSLREQVM1080
 1081 QVTELALSCT QQDPAMRPTM RDAVKLLEDV KHLARSCSSD SVR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle