YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BOR5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.59
Transmembrane Helix	38	59	0.83
Non-Cytoplasmic	60	76	0.55
Transmembrane Helix	77	108	0.57
Cytoplasmic	109	124	0.48
Transmembrane Helix	125	150	0.84
Non-Cytoplasmic	151	158	0.42
Transmembrane Helix	159	181	0.79
Cytoplasmic	182	200	0.47
Transmembrane Helix	201	221	0.93
Non-Cytoplasmic	222	238	0.45
Transmembrane Helix	239	259	0.63
Cytoplasmic	260	293	0.72
Transmembrane Helix	294	315	0.90
Non-Cytoplasmic	316	335	0.80
Transmembrane Helix	336	362	0.78
Cytoplasmic	363	473	0.88
Transmembrane Helix	474	495	0.85
Non-Cytoplasmic	496	563	0.81
Transmembrane Helix	564	586	0.88
Cytoplasmic	587	683	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERVEGSK RPFQGIIRDV KGRALCYKQD WIAGLRSGFG ILAPTTYVFF ASALPVIAFG  60
   61 EQLSHDTERS LSTVETLAST ALCGVIHSLL GGQPLLILGV AEPTVLMYKY LYDFAKGRPE 120
  121 LGKQLYLAWV AWVCVWTALL LFLMAIFNMA YIINRFTRIA GELFGMLIAV LFLQQTIKGM 180
  181 VSEFRIPKGE DSKLEKYQFE WLYTNGLLGL IFTVGLVYTA LKSRKARSWP YGTGCCRSFV 240
  241 ADYGVPLMVV VWTALSFSTP SKLPSGVPRR LVSPLPWDSV SLTHWTVIKD MGKVSPGYIF 300
  301 AAFIPALMIA GLYFFDHSVV SQLAQQKEFN LKNPSAYHYD ILLLGFMVLI CGMLGLPPSN 360
  361 GVLPQSPMHT KSLAVFKRQL MRRKMVMTAK ESIRQKATSS QVYEDMEQVF IEMDKSPLAE 420
  421 THTTLINELQ DLKEAVMKKS DDDGDTGEES GFDPEKHVDA YLPVRVNEQR VSNLLQSLLV 480
  481 IGAVFALPVI KLIPTSLLWG YFAYMAIDSL PDNQFFERTV LLFVPPTRRF KVLEGAHASF 540
  541 VEKVPHKSIA AFTLFQILYF GLCYGVTWIP VAGIMFPVLF FLLVAIRQYL LPKLFKPAYL 600
  601 RELDAAEYEE IPGTPRNPLE LSFRSNNSAR GVQECDAEIL DELTTSRGEL KVRTLGHNED 660
  661 KGHQIYPKEI VEVGDGDMSS SRE