YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRFB1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMELTVLGP LAGRSFAIAG KPKLLLLRPT NLPLLRLSLP LSLPNFSSSS RFNSPIVFAA  60
   61 QESNLSVSNE NETSEWLMQD FYTLRKDVEI ASARVEEIRA SANLQQLEQE ITNLESKATD 120
  121 TSFWDDRTKA QETLSSLNDL KDRMRLLSEF KTMVEDAETI VKLTEEMDST DVSLLEEAMG 180
  181 IIKELNKSLD KFELTQLLSG PYDKEGAVVY ITAGAGGTDA QDWADMLLRM YMRWGEKQRY 240
  241 KTKVVEMSNG EEAGIKSATL EIEGRYAYGY ISGEKGTHRI VRQSPFNSKG LRQTSFSGVE 300
  301 VMPLLPEEAV GIEIPEEDLD ISFTRAGGKG GQNVNKVETA VRITHIPTGV AVRCTEERSQ 360
  361 LANKTRALIR LKAKLMVIAE EQRATEIKEI RGDAVKAEWG QQIRNYVFHP YKLVKDVRTG 420
  421 HETSDITSVM DGDLDPFIKA YLKHKYTLAM ASAVTN

Type	Start	End	Confidence
Signal Peptide	1	17	0.73
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	456	0.99