YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9294262, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYVNVEKRW VFPLVITSLV CVFLLATSFN MGLVSSLRTI NGIFSIIPSR LVKNQTRLDF  60
   61 AESKVARQTR VLPHEDKLPR FAYLVSGSKG DVEKLWRTLR AVYHPRNQYV VHLDLESPVN 120
  121 ERLELASRIN NDPMYSKTGN VYMITKANLV TYKGPTMVAN TLHACAVLLK RNANWDWFIN 180
  181 LSASDYPLVT QDDLLHTFST LDRNLNFIEH TSQLGWKEEK RAQPLMIDPG LYLLNKSDIY 240
  241 WVTPRRSLPT AFKLFTGSAW MALSRPFVEY CIWGWDNLPR TLLMYYTNFV SSPEGYFQTV 300
  301 ICNVPEFAKT AVNHDLHYIS WDNPPQQHPH VLSLNDTMPM IWSGAAFARK FRRDDEVLNK 360
  361 IDKELLKRRN DKDSFTPGGW CSGKPKCSRV GNVAKIVPSF GAQRLQGLVT RLVNEANTGV 420
  421 SQCK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.84
Transmembrane Helix	10	34	0.77
Non-Cytoplasmic	35	424	0.96