YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TDR_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKNISPSL VLHPLLLLLL PFFAFNSLAL KFSPQLLSLL SLKTSLSGPP SAFQDWKVPV  60
   61 NGQNDAVWCS WSGVVCDNVT AQVISLDLSH RNLSGRIPIQ IRYLSSLLYL NLSGNSLEGS 120
  121 FPTSIFDLTK LTTLDISRNS FDSSFPPGIS KLKFLKVFNA FSNNFEGLLP SDVSRLRFLE 180
  181 ELNFGGSYFE GEIPAAYGGL QRLKFIHLAG NVLGGKLPPR LGLLTELQHM EIGYNHFNGN 240
  241 IPSEFALLSN LKYFDVSNCS LSGSLPQELG NLSNLETLFL FQNGFTGEIP ESYSNLKSLK 300
  301 LLDFSSNQLS GSIPSGFSTL KNLTWLSLIS NNLSGEVPEG IGELPELTTL FLWNNNFTGV 360
  361 LPHKLGSNGK LETMDVSNNS FTGTIPSSLC HGNKLYKLIL FSNMFEGELP KSLTRCESLW 420
  421 RFRSQNNRLN GTIPIGFGSL RNLTFVDLSN NRFTDQIPAD FATAPVLQYL NLSTNFFHRK 480
  481 LPENIWKAPN LQIFSASFSN LIGEIPNYVG CKSFYRIELQ GNSLNGTIPW DIGHCEKLLC 540
  541 LNLSQNHLNG IIPWEISTLP SIADVDLSHN LLTGTIPSDF GSSKTITTFN VSYNQLIGPI 600
  601 PSGSFAHLNP SFFSSNEGLC GDLVGKPCNS DRFNAGNADI DGHHKEERPK KTAGAIVWIL 660
  661 AAAIGVGFFV LVAATRCFQK SYGNRVDGGG RNGGDIGPWK LTAFQRLNFT ADDVVECLSK 720
  721 TDNILGMGST GTVYKAEMPN GEIIAVKKLW GKNKENGKIR RRKSGVLAEV DVLGNVRHRN 780
  781 IVRLLGCCTN RDCTMLLYEY MPNGSLDDLL HGGDKTMTAA AEWTALYQIA IGVAQGICYL 840
  841 HHDCDPVIVH RDLKPSNILL DADFEARVAD FGVAKLIQTD ESMSVVAGSY GYIAPEYAYT 900
  901 LQVDKKSDIY SYGVILLEII TGKRSVEPEF GEGNSIVDWV RSKLKTKEDV EEVLDKSMGR 960
  961 SCSLIREEMK QMLRIALLCT SRSPTDRPPM RDVLLILQEA KPKRKTVGDN VIVVGDVNDV1020
 1021 NFEDVCSVDV GHDVKCQRIG V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle