YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALMT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPKLESFR RGSMFDGSFR RGSMFDGSFR QSMRDRLILQ SRGYSNVNDD DKTSVRCCSY  60
   61 SYFSDKITGV VKKLKDVLVT AWEMGTADPR KMIFSAKMGL ALTLTSILIF FKIPGLELSG 120
  121 HYLWAILTVV VIFEFSIGAT FSKGCNRGLG TLSAGGLALG MSWISEMTGN WADVFNAASI 180
  181 FVVAFFATYA KLYPTMKPYE YGFRVFLLTY CYVIVSGYKT GEFMETAVSR FLLIALGASV 240
  241 GLIVNTCIYP IWAGEDLHNL VAKNFVNVAT SLEGCVNGYL ECVAYDTIPS RILVYEAVAE 300
  301 DPVYSGYRSA VQSTSQEDTL MSFASWEPPH GPYKSFRYPW ALYVKVGGAL RHCAIMVMAL 360
  361 HGCILSEIQA AEDRRREFRN ELQRVGIEGA KVLRYIGESL KKMEKLNPIE DILYEIHQAA 420
  421 EELQSKIDKK SYLLVNAKNW EIGNRPRVRD LTDEQKISNL DSDLSRILAH KSQSEATLRP 480
  481 PKNWDDVTTA ANLSSATMLP YLQSRTMIHK QPSWPSRISI TPGSMLQPPL GEPGKMYESA 540
  541 SNLSLATFAS LLIEFVARLE NLVNAYDELS VKANFKEAVS E

Type	Start	End	Confidence
Cytoplasmic	1	92	0.99
Transmembrane Helix	93	113	0.92
Non-Cytoplasmic	114	120	0.77
Transmembrane Helix	121	141	0.91
Cytoplasmic	142	147	0.80
Transmembrane Helix	148	165	0.90
Non-Cytoplasmic	166	173	0.68
Transmembrane Helix	174	193	0.90
Cytoplasmic	194	200	0.84
Transmembrane Helix	201	221	0.73
Non-Cytoplasmic	222	230	0.58
Transmembrane Helix	231	253	0.89
Cytoplasmic	254	347	0.69
Transmembrane Helix	348	365	0.56
Non-Cytoplasmic	366	581	0.59