YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.86
Transmembrane Helix	20	41	0.93
Non-Cytoplasmic	42	83	0.87
Transmembrane Helix	84	105	0.81
Cytoplasmic	106	112	0.82
Transmembrane Helix	113	132	0.92
Non-Cytoplasmic	133	137	0.72
Transmembrane Helix	138	160	0.84
Cytoplasmic	161	169	0.86
Transmembrane Helix	170	192	0.88
Non-Cytoplasmic	193	203	0.78
Transmembrane Helix	204	223	0.95
Cytoplasmic	224	284	0.93
Transmembrane Helix	285	308	0.84
Non-Cytoplasmic	309	321	0.83
Transmembrane Helix	322	344	0.91
Cytoplasmic	345	350	0.94
Transmembrane Helix	351	373	0.85
Non-Cytoplasmic	374	389	0.77
Transmembrane Helix	390	412	0.89
Cytoplasmic	413	427	0.85
Transmembrane Helix	428	447	0.93
Non-Cytoplasmic	448	454	0.75
Transmembrane Helix	455	476	0.92
Cytoplasmic	477	517	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGAFVSEG GGGGNSYEGG VTVFVIMTCI VAAMGGLLFG YDLGISGGVT SMEEFLSKFF  60
   61 PEVDKQMHEA RRETAYCKFD NQLLQLFTSS LYLAALASSF VASAVTRKYG RKISMFVGGV 120
  121 AFLIGSLFNA FATNVAMLIV GRLLLGVGVG FANQSTPVYL SEMAPAKIRG ALNIGFQMAI 180
  181 TIGILIANLI NYGTSQMAKN GWRVSLGLAA VPAVIMVIGS FVLPDTPNSM LERGKYEQAR 240
  241 EMLQKIRGAD NVDEEFQDLC DACEAAKKVD NPWKNIFQQA KYRPALVFCS AIPFFQQITG 300
  301 INVIMFYAPV LFKTLGFADD ASLISAVITG AVNVVSTLVS IYAVDRYGRR ILFLEGGIQM 360
  361 IVSQIVVGTL IGMKFGTTGS GTLTPATADW ILAFICLYVA GFAWSWGPLG WLVPSEICPL 420
  421 EIRPAGQAIN VSVNMFFTFL IGQFFLTMLC HMKFGLFYFF GGMVAVMTVF IYFLLPETKG 480
  481 VPIEEMGRVW KQHPFWKRYM PDDAVIGGGE ENYVKEV