YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALSC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	303	0.70
Transmembrane Helix	304	324	0.70
Cytoplasmic	325	344	0.57
Transmembrane Helix	345	364	0.57
Non-Cytoplasmic	365	385	0.80
Transmembrane Helix	386	408	0.89
Cytoplasmic	409	427	0.81
Transmembrane Helix	428	450	0.93
Non-Cytoplasmic	451	489	0.57
Transmembrane Helix	490	510	0.78
Cytoplasmic	511	543	0.47
Transmembrane Helix	544	578	0.65
Non-Cytoplasmic	579	1344	0.77
Transmembrane Helix	1345	1368	0.90
Cytoplasmic	1369	1390	0.60
Transmembrane Helix	1391	1415	0.62
Non-Cytoplasmic	1416	1429	0.52
Transmembrane Helix	1430	1446	0.69
Cytoplasmic	1447	1487	0.81
Transmembrane Helix	1488	1507	0.79
Non-Cytoplasmic	1508	1513	0.72
Transmembrane Helix	1514	1537	0.89
Cytoplasmic	1538	1589	0.87
Transmembrane Helix	1590	1609	0.82
Non-Cytoplasmic	1610	1620	0.84
Transmembrane Helix	1621	1643	0.89
Cytoplasmic	1644	1655	0.90
Transmembrane Helix	1656	1675	0.92
Non-Cytoplasmic	1676	1684	0.61
Transmembrane Helix	1685	1703	0.95
Cytoplasmic	1704	1725	0.82
Transmembrane Helix	1726	1747	0.89
Non-Cytoplasmic	1748	1780	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRHRTVPP QTGRPLAAEA VGIEEEPYNI IPVNNLLADH PSLRFPEVRA AAAALKTVGD  60
   61 LRRPPYVQWR SHYDLLDWLA LFFGFQKDNV RNQREHMVLH LANAQMRLSP PPDNIDSLDS 120
  121 AVVRRFRRKL LANYSSWCSY LGKKSNIWIS DRNPDSRREL LYVGLYLLIW GEAANLRFMP 180
  181 ECICYIFHNM ASELNKILED CLDENTGQPY LPSLSGENAF LTGVVKPIYD TIQAEIDESK 240
  241 NGTVAHCKWR NYDDINEYFW TDRCFSKLKW PLDLGSNFFK SRGKSVGKTG FVERRTFFYL 300
  301 YRSFDRLWVM LALFLQAAII VAWEEKPDTS SVTRQLWNAL KARDVQVRLL TVFLTWSGMR 360
  361 LLQAVLDAAS QYPLVSRETK RHFFRMLMKV IAAAVWIVAF TVLYTNIWKQ KRQDRQWSNA 420
  421 ATTKIYQFLY AVGAFLVPEI LALALFIIPW MRNFLEETNW KIFFALTWWF QGKSFVGRGL 480
  481 REGLVDNIKY STFWIFVLAT KFTFSYFLQV KPMIKPSKLL WNLKDVDYEW HQFYGDSNRF 540
  541 SVALLWLPVV LIYLMDIQIW YAIYSSIVGA VVGLFDHLGE IRDMGQLRLR FQFFASAIQF 600
  601 NLMPEEQLLN ARGFGNKFKD GIHRLKLRYG FGRPFKKLES NQVEANKFAL IWNEIILAFR 660
  661 EEDIVSDREV ELLELPKNSW DVTVIRWPCF LLCNELLLAL SQARELIDAP DKWLWHKICK 720
  721 NEYRRCAVVE AYDSIKHLLL SIIKVDTEEH SIITVFFQII NQSIQSEQFT KTFRVDLLPK 780
  781 IYETLQKLVG LVNDEETDSG RVVNVLQSLY EIATRQFFIE KKTTEQLSNE GLTPRDPASK 840
  841 LLFQNAIRLP DASNEDFYRQ VRRLHTILTS RDSMHSVPVN LEARRRIAFF SNSLFMNMPH 900
  901 APQVEKMMAF SVLTPYYSEE VVYSKEQLRN ETEDGISTLY YLQTIYADEW KNFKERMHRE 960
  961 GIKTDSELWT TKLRDLRLWA SYRGQTLART VRGMMYYYRA LKMLAFLDSA SEMDIREGAQ1020
 1021 ELGSVRNLQG ELGGQSDGFV SENDRSSLSR ASSSVSTLYK GHEYGTALMK FTYVVACQIY1080
 1081 GSQKAKKEPQ AEEILYLMKQ NEALRIAYVD EVPAGRGETD YYSVLVKYDH QLEKEVEIFR1140
 1141 VKLPGPVKLG EGKPENQNHA MIFTRGDAVQ TIDMNQDSYF EEALKMRNLL QEYNHYHGIR1200
 1201 KPTILGVREH IFTGSVSSLA WFMSAQETSF VTLGQRVLAN PLKVRMHYGH PDVFDRFWFL1260
 1261 SRGGISKASR VINISEDIFA GFNCTLRGGN VTHHEYIQVG KGRDVGLNQI SMFEAKVASG1320
 1321 NGEQVLSRDV YRLGHRLDFF RMLSFFYTTV GFFFNTMMVI LTVYAFLWGR VYLALSGVEK1380
 1381 SALADSTDTN AALGVILNQQ FIIQLGLFTA LPMIVEWSLE EGFLLAIWNF IRMQIQLSAV1440
 1441 FYTFSMGTRA HYFGRTILHG GAKYRATGRG FVVEHKGFTE NYRLYARSHF VKAIELGLIL1500
 1501 IVYASHSPIA KDSLIYIAMT ITSWFLVISW IMAPFVFNPS GFDWLKTVYD FEDFMNWIWY1560
 1561 QGRISTKSEQ SWEKWWYEEQ DHLRNTGKAG LFVEIILVLR FFFFQYGIVY QLKIANGSTS1620
 1621 LFVYLFSWIY IFAIFVLFLV IQYARDKYSA KAHIRYRLVQ FLLIVLAILV IVALLEFTHF1680
 1681 SFIDIFTSLL AFIPTGWGIL LIAQTQRKWL KNYTIFWNAV VSVARMYDIL FGILIMVPVA1740
 1741 FLSWMPGFQS MQTRILFNEA FSRGLRIMQI VTGKKSKGDV