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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSLD2_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNKHFDKS RSNLSNNSDI QEPGRPPAGH SVKFAQRTSS GRYINYSRDD LDSELGGQDF  60
   61 MSYTVHIPPT PDNQPMDPSI SQKVEEQYVA NSMFTGGFKS NTRAHLMHKV IETEPNHPQM 120
  121 AGSKGSSCAI PGCDAKVMSD ERGQDLLPCE CDFKICRDCF IDAVKTGGGI CPGCKEPYKN 180
  181 THLTDQVDEN GQQRPMLPGG GGSKMERRLS MVKSTNKSAL MRSQTGDFDH NRWLFETTGT 240
  241 YGYGNAFWTK DGDFGSGKDG DGDGDGMGME AQDLMSRPWR PLTRKLKIPA GVISPYRLLI 300
  301 FIRIVVLALF LTWRVKHQNP DAVWLWGMSV VCELWFALSW LLDQLPKLCP INRATDLQVL 360
  361 KEKFETPTAS NPTGKSDLPG FDVFVSTADP EKEPPLVTAN TILSILAAEY PVEKLSCYVS 420
  421 DDGGALLTFE AMAEAASFAN IWVPFCRKHA IEPRNPDSYF SLKRDPYKNK VKSDFVKDRR 480
  481 RVKREFDEFK VRVNSLPDSI RRRSDAYHAR EEIKAMKMQR QNRDDEPMEP VKIPKATWMA 540
  541 DGTHWPGTWL TSASDHAKGD HAGIIQVMLK PPSDEPLHGV SEGFLDLTDV DIRLPLLVYV 600
  601 SREKRPGYDH NKKAGAMNAL VRASAIMSNG PFILNLDCDH YIYNSEALRE GMCFMMDRGG 660
  661 DRLCYVQFPQ RFEGIDPSDR YANHNTVFFD VNMRALDGLM GPVYVGTGCL FRRIALYGFN 720
  721 PPRSKDFSPS CWSCCFPRSK KKNIPEENRA LRMSDYDDEE MNLSLVPKKF GNSTFLIDSI 780
  781 PVAEFQGRPL ADHPAVKNGR PPGALTIPRE LLDASTVAEA IAVISCWYED KTEWGSRIGW 840
  841 IYGSVTEDVV TGYRMHNRGW KSVYCVTKRD AFRGTAPINL TDRLHQVLRW ATGSVEIFFS 900
  901 RNNALLASSK MKILQRIAYL NVGIYPFTSI FLIVYCFLPA LSLFSGQFIV QTLNVTFLVY 960
  961 LLIISITLCL LALLEIKWSG ISLEEWWRNE QFWLIGGTSA HLAAVLQGLL KVVAGVEISF1020
 1021 TLTSKSGGDD IDDEFADLYM VKWTSLMIPP ITIIMVNLIA IAVGFSRTIY SVVPQWSKLI1080
 1081 GGVFFSFWVL AHLYPFAKGL MGRRGRTPTI VYVWSGLVAI TISLLWVAIN PPAGNTEIGG1140
 1141 NFSFP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle