YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U78D1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKFSEPIRD SHVAVLAFFP VGAHAGPLLA VTRRLAAASP STIFSFFNTA RSNASLFSSD  60
   61 HPENIKVHDV SDGVPEGTML GNPLEMVELF LEAAPRIFRS EIAAAEIEVG KKVTCMLTDA 120
  121 FFWFAADIAA ELNATWVAFW AGGANSLCAH LYTDLIRETI GLKDVSMEET LGFIPGMENY 180
  181 RVKDIPEEVV FEDLDSVFPK ALYQMSLALP RASAVFISSF EELEPTLNYN LRSKLKRFLN 240
  241 IAPLTLLSST SEKEMRDPHG CFAWMGKRSA ASVAYISFGT VMEPPPEELV AIAQGLESSK 300
  301 VPFVWSLKEK NMVHLPKGFL DRTREQGIVV PWAPQVELLK HEAMGVNVTH CGWNSVLESV 360
  361 SAGVPMIGRP ILADNRLNGR AVEVVWKVGV MMDNGVFTKE GFEKCLNDVF VHDDGKTMKA 420
  421 NAKKLKEKLQ EDFSMKGSSL ENFKILLDEI VKV

Type	Start	End	Confidence
Signal Peptide	1	25	0.86
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	453	0.99