YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLAH3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	253	0.97
Transmembrane Helix	254	276	0.85
Non-Cytoplasmic	277	296	0.90
Transmembrane Helix	297	320	0.89
Cytoplasmic	321	333	0.88
Transmembrane Helix	334	356	0.87
Non-Cytoplasmic	357	360	0.90
Transmembrane Helix	361	380	0.93
Cytoplasmic	381	396	0.85
Transmembrane Helix	397	416	0.88
Non-Cytoplasmic	417	421	0.80
Transmembrane Helix	422	441	0.93
Cytoplasmic	442	452	0.82
Transmembrane Helix	453	474	0.90
Non-Cytoplasmic	475	483	0.73
Transmembrane Helix	484	503	0.93
Cytoplasmic	504	510	0.84
Transmembrane Helix	511	532	0.89
Non-Cytoplasmic	533	539	0.73
Transmembrane Helix	540	562	0.91
Cytoplasmic	563	635	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKPNYVIQ VEEELPTLLR KATTEEMVGF DNYKENGHPF PHSISRFHPS HASTTTLNGQ  60
   61 ETSRSIDTME AHHHNYNETT PWTHQRKPSI SMPTSPNVLM ISDPTTSLSS ENHKNSGSTG 120
  121 KSVKFLSQPM TKVSSLYIES GNGDDDRRQS HDNHHHHLHR QHQSGHHQNQ NQAANKLKDN 180
  181 RYNSFKTWSG KLERQFTRKP ASVEPEAPNR NNQNLNTNEA MPVDRYYDAL EGPELETLRP 240
  241 QEEIVLPNDK KWPFLLRYPI STFGMCLGVS SQAIMWKTLA TAEPTKFLHV PLWINQGLWF 300
  301 ISVALILTIA TIYLLKIILF FEAVRREYYH PIRINFFFAP FISLLFLALG VPPSIITDLP 360
  361 HFLWYLLMFP FICLELKIYG QWMSGGQRRL SRVANPTNHL SVVGNFVGAL LGASMGLREG 420
  421 PIFFYAVGMA HYLVLFVTLY QRLPTNETLP KDLHPVFFLF VAAPSVASMA WAKVTGSFDY 480
  481 GSKVCYFIAI FLYFSLAVRI NFFRGIKFSL SWWAYTFPMT GAAIATIRYA TVVKSTMTQI 540
  541 MCVVLCAIAT LVVFALLVTT IIHAFVLRDL FPNDLAIAIS NRPRPKQNSQ HRWLDQLRNV 600
  601 SSENIENYLK FTDSDSSQSN DVEACNGKTQ ESDSS