YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8778623
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGVTETDKL ANGIFHLVCL ADLEFDYINP YDSASRINSV VLPEFIVQGV LCVFYLLTGH  60
   61 WFMTLLCLPY LYYNFHLYSK RQHLVDVTEI FNLLNWEKKK RLIEMSSISG LVEDEISSFF 120
  121 ESSPPLKNKE EIVANLNQFI ELNSSCQGGM RRIVCVTSGG TTVPLEQRCV RYIDNFSSGN 180
  181 RGAASTENFV KAGYAVIFLY RRFSEMMLLY IGSIMSSLGE LVNRIAGIFL MIHSLNVLSF 240
  241 QMPKTFKVFH YNLFLSSYQT YVVHGSHSGA VKMAVMDQQA AVAEGRLLKL PFSTIYEYLQ 300
  301 MLRLIATILK DVGPCSMFYL AAAVSDFYVP WLSMARTEHK IESGSGPLDI RLAQVPKMLS 360
  361 ILRSNWAPKA FCISFKLETD SKILLEKATK ALQKYKVHAV VANELLTRKE EVVVVSSSGN 420
  421 VVVRRDSNKP ESIVEDNLIR LLVDRHSTYI KESLT

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.61
Transmembrane Helix	51	73	0.74
Cytoplasmic	74	207	0.74
Transmembrane Helix	208	232	0.68
Non-Cytoplasmic	233	455	0.79