YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB1C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.94
Transmembrane Helix	33	56	0.86
Cytoplasmic	57	71	0.92
Transmembrane Helix	72	92	0.89
Non-Cytoplasmic	93	110	0.87
Transmembrane Helix	111	130	0.93
Cytoplasmic	131	140	0.86
Transmembrane Helix	141	163	0.89
Non-Cytoplasmic	164	172	0.85
Transmembrane Helix	173	194	0.89
Cytoplasmic	195	336	0.91
Transmembrane Helix	337	361	0.86
Non-Cytoplasmic	362	426	0.77
Transmembrane Helix	427	459	0.73
Cytoplasmic	460	522	0.95
Transmembrane Helix	523	546	0.89
Non-Cytoplasmic	547	553	0.73
Transmembrane Helix	554	571	0.84
Cytoplasmic	572	909	0.96
Transmembrane Helix	910	931	0.91
Non-Cytoplasmic	932	955	0.90
Transmembrane Helix	956	977	0.92
Cytoplasmic	978	1025	0.89
Transmembrane Helix	1026	1047	0.80
Non-Cytoplasmic	1048	1052	0.54
Transmembrane Helix	1053	1072	0.86
Cytoplasmic	1073	1136	0.79
Transmembrane Helix	1137	1159	0.82
Non-Cytoplasmic	1160	1169	0.65
Transmembrane Helix	1170	1195	0.73
Cytoplasmic	1196	1622	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFEPLDWYC KPVPNGVWTK TVDYAFGAYT PCAIDSFVLG ISHLVLLILC LYRLWLITKD  60
   61 HKVDKFCLRS KWFSYFLALL AAYATAEPLF RLVMRISVLD LDGAGFPPYE AFMLVLEAFA 120
  121 WGSALVMTVV ETKTYIHELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYGS FKLYLYISEV 180
  181 AVQVAFGTLL FVYFPNLDPY PGYTPVGTEN SEDYEYEELP GGENICPERH ANLFDSIFFS 240
  241 WLNPLMTLGS KRPLTEKDVW HLDTWDKTET LMRSFQKSWD KELEKPKPWL LRALNNSLGG 300
  301 RFWWGGFWKI GNDCSQFVGP LLLNELLKSM QLNEPAWIGY IYAISIFVGV VLGVLCEAQY 360
  361 FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RKKFQTGKIT NLMTTDAESL QQICQSLHTM 420
  421 WSAPFRIIVA LVLLYQQLGV ASIIGALFLV LMFPIQTVII SKTQKLTKEG LQRTDKRIGL 480
  481 MNEVLAAMDT VKCYAWENSF QSKVQTVRDD ELSWFRKAQL LSAFNMFILN SIPVLVTVVS 540
  541 FGVFSLLGGD LTPARAFTSL SLFSVLRFPL FMLPNIITQM VNANVSLNRL EEVLSTEERV 600
  601 LLPNPPIEPG QPAISIRNGY FSWDSKADRP TLSNINLDIP LGSLVAVVGS TGEGKTSLIS 660
  661 AMLGELPARS DATVTLRGSV AYVPQVSWIF NATVRDNILF GAPFDQEKYE RVIDVTALQH 720
  721 DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV CILDDPLSAL DAHVGQQVFE 780
  781 KCIKRELGQT TRVLVTNQLH FLSQVDKILL VHEGTVKEEG TYEELCHSGP LFQRLMENAG 840
  841 KVEDYSEENG EAEVDQTSVK PVENGNANNL QKDGIETKNS KEGNSVLVKR EERETGVVSW 900
  901 KVLERYQNAL GGAWVVMMLV ICYVLTQVFR VSSSTWLSEW TDSGTPKTHG PLFYNIVYAL 960
  961 LSFGQVSVTL INSYWLIMSS LYAAKKMHDA MLGSILRAPM VFFQTNPLGR IINRFAKDMG1020
 1021 DIDRTVAVFV NMFMGSIAQL LSTVILIGIV STLSLWAIMP LLVVFYGAYL YYQNTSREIK1080
 1081 RMDSTTRSPV YAQFGEALNG LSSIRAYKAY DRMAEINGRS MDNNIRFTLV NMAANRWLGI1140
 1141 RLEVLGGLMV WLTASLAVMQ NGKAANQQAY ASTMGLLLSY ALSITSSLTA VLRLASLAEN1200
 1201 SLNSVERVGN YIEIPSEAPL VIENNRPPPG WPSSGSIKFE DVVLRYRPEL PPVLHGVSFL1260
 1261 ISPMDKVGIV GRTGAGKSSL LNALFRIVEL EKGRILIDEC DIGRFGLMDL RKVLGIIPQA1320
 1321 PVLFSGTVRF NLDPFSEHND ADLWESLERA HLKDTIRRNP LGLDAEVTEA GENFSVGQRQ1380
 1381 LLSLARALLR RSKILVLDEA TAAVDVRTDV LIQKTIREEF KSCTMLIIAH RLNTIIDCDK1440
 1441 VLVLDSGKVQ EFSSPENLLS NGESSFSKMV QSTGTANAEY LRSITLENKR TREANGDDSQ1500
 1501 PLEGQRKWQA SSRWAAAAQF ALAVSLTSSH NDLQSLEIED DNSILKKTKD AVVTLRSVLE1560
 1561 GKHDKEIEDS LNQSDISRER WWPSLYKMVE GLAVMSRLAR NRMQHPDYNL EGKSFDWDNV1620
 1621 EM