YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42563535, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLLPIYLI ILAFLCTVGA IALALFHIYK HLLNYTEPIY QRYIVRIVFM VPVYALMSFL  60
   61 ALVLPKSSIY FNSIREVYEA WVIYNFLSLC LAWVGGPGSV VISLTGRSLK PSWHLMTCCI 120
  121 PPLPLDGRFI RRCKQGCLQF VILKPILVAV TLVLYAKGKY KDGNFSPDQS YLYLTIIYTI 180
  181 SYTVALYALV LFYVACKDLL QPFNPVPKFV IIKSVVFLTY WQGVLVFLFA KSGFIRDEEE 240
  241 AALFQNFIIC VEMLIAAAAH FYAFPYKEYA EANVGGARSF SGSLAHALML NDFYHDTVHQ 300
  301 FAPTYHDYVL YNHNDGGEEG TRKYRARTFV PTGQEMDAVR KNKHMFGNKI DGVSVSSQSS 360
  361 ETSTPKTSGV TYDPARPESM KSSLLVDASD SVSTMYDMSL IDIDISSYPS KVPSANISGG 420
  421 PK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.77
Transmembrane Helix	7	29	0.93
Cytoplasmic	30	42	0.79
Transmembrane Helix	43	64	0.92
Non-Cytoplasmic	65	81	0.75
Transmembrane Helix	82	106	0.88
Cytoplasmic	107	136	0.83
Transmembrane Helix	137	156	0.86
Non-Cytoplasmic	157	173	0.81
Transmembrane Helix	174	196	0.91
Cytoplasmic	197	208	0.88
Transmembrane Helix	209	230	0.85
Non-Cytoplasmic	231	241	0.71
Transmembrane Helix	242	264	0.81
Cytoplasmic	265	422	0.72