YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148744430
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VMAMTRRREL STLRTEESRA RWRLTIITVC CVLAIMVSLI VGLYFTVRVV NSKFFFCSGS  60
   61 LKFITIEKAC NGRADCAGGE DENVCISKLR INDTFPVRLM GDRLVLQVYI NASGWRTVCA 120
  121 DNWRTKHTRL TCQQLGYTVS PLSTRIPVRS LFFDPQNEFA TVSNDSAQSD IQSFLSASNK 180
  181 CSSGSVVSVS CSDCGEVVGE DRIVGGVETS IEHWPWQVSL QFNHRHMCGG SLLSTSWIIS 240
  241 AAHCFTGRTQ ELSRWTVVLG QTKVMDVVGV SVDMIVIHKD YNRLTNDFDI AMLKLTWPVK 300
  301 TGESILPVCL PPHQLAIKDM LVVTGWGLLK EGGALPTVLQ KASVPLVNRS ECSKPTIYSS 360
  361 SITPRMLCAG FLQGNVDACQ GDSGGPLVYL SSRWQLIGIV SWGVGCAREG KPGVYADVTQ 420
  421 LLDWIYTVME RNP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	45	0.95
Non-Cytoplasmic	46	433	0.95