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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|148725297, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSRRDCRC DMIFLSGCLL LSVLGFQPAL AKVCNDYTRH GLDNNWYARD GEKLPIMVLM  60
   61 PMNESALMSS ISQGIEPAVQ LAIQHIRESR QYSFSLITKI YDTECDNAKG LRAFFDAICY 120
  121 GPKHLMIFGG VCPSVTSIIA ESLEGWNLVQ LSFAATTPVL ADRKKYPNFF RTVPSDNAVN 180
  181 PAVVKFLNFY NWSRVGTLTQ DVQRFSEVRN DLTNELEKAD IQIADTESFS NDPCVNVKKL 240
  241 KDNDVRIIIG QFDENLAAKV FCCAYNLNMY GSKYQWIIPG WYQGNWWEQA NSTNCTTRKL 300
  301 LTAMEGYISV DFEPLSAKQI KGISGRTPQE YEREYNRERD QKGVETSKFH GFAYDGIWVI 360
  361 AKTLTRVMEL LRHKERHDMY HNFTVDDREV GKMVLDVMNE TNFFGVTGQV MFRNGERMGT 420
  421 IKFTQFQEGQ EVKVGEYNAI ADVLDLINNT IRFQGVEPPK DRTFVRLQRR QINVPLYSIL 480
  481 STITILGMLM GGAFLFFNIK NRNHRLIKMS SPYMNNLIIL GGMLSYASIF LFGLDGSFVS 540
  541 DKEFETLCTV RTWILIVGYT TAFGAMFAKT WRVHAIFKNV KMKKKIIKDQ KLFIIVGGML 600
  601 LIDLCILICW QIVDPLKRTV EEYSLEADPQ GRDIAIRPFL EHCENTHMTI WLGIVYAYKG 660
  661 LLMLFGCFLA WETRNVSIPA LNDSKYIGMS VYNVGIMCII GAAVSFLTRD QPNVQFCIVA 720
  721 LVIIFCSTIT LCLVFVPKFV TMRTNPDAAT QNRRLKFTQN QKKEDSKTST SVTSVNQANT 780
  781 SRLDGLQSDN HRLRMKITEL DKELEEVTMQ LQDTPEKTPY IKQNHYQDAN NILSIRNFTD 840
  841 GKDGEKSLKN HLEQKPQAQW GSADPSRISR GPLEDINSPE HIQRRLSLQL PILHHAYLPS 900
  901 IGGVDASCSS PTSSPSSSPR HRHMPPSYRV MVSGL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle