YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AAP8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.91
Transmembrane Helix	34	55	0.88
Non-Cytoplasmic	56	59	0.63
Transmembrane Helix	60	81	0.74
Cytoplasmic	82	159	0.61
Transmembrane Helix	160	177	0.65
Non-Cytoplasmic	178	184	0.52
Transmembrane Helix	185	209	0.87
Cytoplasmic	210	275	0.72
Transmembrane Helix	276	297	0.95
Non-Cytoplasmic	298	314	0.93
Transmembrane Helix	315	336	0.89
Cytoplasmic	337	378	0.96
Transmembrane Helix	379	399	0.89
Non-Cytoplasmic	400	404	0.59
Transmembrane Helix	405	425	0.86
Cytoplasmic	426	436	0.84
Transmembrane Helix	437	461	0.90
Non-Cytoplasmic	462	475	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAYNNPSAV ESGDAAVKSV DDDGREKRTG TFWTASAHII TAVIGSGVLS LAWAIAQLGW  60
   61 VAGTTVLVAF AIITYYTSTL LADCYRSPDS ITGTRNYNYM GVVRSYLGGK KVQLCGVAQY 120
  121 VNLVGVTIGY TITASISLVA IGKSNCYHDK GHKAKCSVSN YPYMAAFGIV QIILSQLPNF 180
  181 HKLSFLSIIA AVMSFSYASI GIGLAIATVA SGKIGKTELT GTVIGVDVTA SEKVWKLFQA 240
  241 IGDIAFSYAF TTILIEIQDT LRSSPPENKV MKRASLVGVS TTTVFYILCG CIGYAAFGNQ 300
  301 APGDFLTDFG FYEPYWLIDF ANACIALHLI GAYQVYAQPF FQFVEENCNK KWPQSNFINK 360
  361 EYSSKVPLLG KCRVNLFRLV WRTCYVVLTT FVAMIFPFFN AILGLLGAFA FWPLTVYFPV 420
  421 AMHIAQAKVK KYSRRWLALN LLVLVCLIVS ALAAVGSIIG LINSVKSYKP FKNLD