YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20259958, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.63
Transmembrane Helix	18	39	0.92
Non-Cytoplasmic	40	81	0.67
Transmembrane Helix	82	103	0.91
Cytoplasmic	104	148	0.93
Transmembrane Helix	149	170	0.91
Non-Cytoplasmic	171	177	0.82
Transmembrane Helix	178	197	0.97
Cytoplasmic	198	210	0.90
Transmembrane Helix	211	232	0.92
Non-Cytoplasmic	233	240	0.89
Transmembrane Helix	241	262	0.94
Cytoplasmic	263	330	0.98
Transmembrane Helix	331	354	0.82
Non-Cytoplasmic	355	365	0.85
Transmembrane Helix	366	385	0.83
Cytoplasmic	386	404	0.77
Transmembrane Helix	405	423	0.95
Non-Cytoplasmic	424	429	0.75
Transmembrane Helix	430	452	0.89
Cytoplasmic	453	459	0.79
Transmembrane Helix	460	479	0.75
Non-Cytoplasmic	480	518	0.79
Transmembrane Helix	519	540	0.90
Cytoplasmic	541	577	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNDETVRFL IHFFNGRWFM VFASFLIMAC AGATYLFGTY SKDIKSTLGY DQTTLNLLGF  60
   61 FKDLGANVGV LSGLIAEVTP TWFVLTIGSA MNFVGYFMIW LTVTGKVAKP KVWQMCLYIC 120
  121 IGANSQNFAN TGALVTCVKN FPESRGVMLG LLKGYVGLSG AIFTQLYFAI YGHDSKSLIL 180
  181 LIAWLPAAVS LVFVYLIREK KVVRQRNELS VFYQFLYISI FLALFLMAMN IAEKQVHFSK 240
  241 AAYAASATIC CALLFVPLTV SVKQELEVWN MMKLPIEEPS EVKVEKPKKE LDLDQDKAAK 300
  301 VNGEEKETKS CFSTVFSPPP RGEDYTILQA LLSTDMIILF VATFCGLGSS LTAVDNLGQI 360
  361 GESLGYPNHT VSSFVSLVSI WNYFGRVFSG FVSEYLLAKY KLPRPLMMTL VLLLSCAGHL 420
  421 LIAFPVPGSV YIASILMGFS FGAQLPLLFA IISELFGLKY YSTLFNCGQL ASPLGSYILN 480
  481 VRVTGMLYDK EALKQLTARG LTRKDVKDLT CLGSQCYKLP FLILAAVTFF GALVSLGLAI 540
  541 RTREFYKGDI YKKFRESPES ESELVPDSRK AVEFVGK