YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMM_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARYEFFRQI FIVLSIVSPL VRSFTVITSD STAPSALIDG PQTGFTMTND GARTEPDEQD  60
   61 AVYDIMRATG NDWAAAIPDV CRGRWHGIEC MPDQDNVYHV VSLSFGALSD DTAFPTCDPQ 120
  121 RSYVSESLTR LKHLKALFFY RCLGRAPQRI PAFLGRLGSS LQTLVLRENG FLGPIPDELG 180
  181 NLTNLKVLDL HKNHLNGSIP LSFNRFSGLR SLDLSGNRLT GSIPGFVLPA LSVLDLNQNL 240
  241 LTGPVPPTLT SCGSLIKIDL SRNRVTGPIP ESINRLNQLV LLDLSYNRLS GPFPSSLQGL 300
  301 NSLQALMLKG NTKFSTTIPE NAFKGLKNLM ILVLSNTNIQ GSIPKSLTRL NSLRVLHLEG 360
  361 NNLTGEIPLE FRDVKHLSEL RLNDNSLTGP VPFERDTVWR MRRKLRLYNN AGLCVNRDSD 420
  421 LDDAFGSKSG STVRLCDAET SRPAPSGTVQ HLSREEDGAL PDGATDVSST SKSLGFSYLS 480
  481 AFFLVFPNFI FMLISS

Type	Start	End	Confidence
Signal Peptide	1	23	0.62
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	473	0.98
Transmembrane Helix	474	494	0.86
Cytoplasmic	495	496	0.74