YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TLC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	112	0.93
Transmembrane Helix	113	133	0.84
Non-Cytoplasmic	134	153	0.83
Transmembrane Helix	154	172	0.91
Cytoplasmic	173	181	0.80
Transmembrane Helix	182	203	0.93
Non-Cytoplasmic	204	234	0.78
Transmembrane Helix	235	261	0.82
Cytoplasmic	262	272	0.73
Transmembrane Helix	273	292	0.91
Non-Cytoplasmic	293	312	0.72
Transmembrane Helix	313	334	0.94
Cytoplasmic	335	365	0.74
Transmembrane Helix	366	385	0.63
Non-Cytoplasmic	386	404	0.62
Transmembrane Helix	405	429	0.81
Cytoplasmic	430	439	0.57
Transmembrane Helix	440	462	0.84
Non-Cytoplasmic	463	464	0.46
Transmembrane Helix	465	487	0.63
Cytoplasmic	488	544	0.59
Transmembrane Helix	545	567	0.85
Non-Cytoplasmic	568	624	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVIQTRGL LSLPTKPIGV RSQLQPSHGL KQRLFAAKPR NLHGLSLSFN GHKKFQTFEP  60
   61 TLHGISISHK ERSTEFICKA EAAAAGDGAV FGEGDSAAVV ASPKIFGVEV ATLKKIIPLG 120
  121 LMFFCILFNY TILRDTKDVL VVTAKGSSAE IIPFLKTWVN LPMAIGFMLL YTKLSNVLSK 180
  181 KALFYTVIVP FIIYFGAFGF VMYPLSNYIH PEALADKLLT TLGPRFMGPI AILRIWSFCL 240
  241 FYVMAELWGS VVVSVLFWGF ANQITTVDEA KKFYPLFGLG ANVALIFSGR TVKYFSNLRK 300
  301 NLGPGVDGWA VSLKAMMSIV VGMGLAICLL YWWVNRYVPL PTRSKNKKEK PKMGTMESLK 360
  361 FLVSSPYIRD LATLVVAYGI SINLVEVTWK SKLKAQFPSP NEYSAFMGDF STCTGVATFT 420
  421 MMLLSQYVFN KYGWGVAAKI TPTVLLLTGV AFFSLILFGG PFAPLVAKLG MTPLLAAVYV 480
  481 GALQNIFSKS AKYSLFDPCK EMAYIPLDED TKVKGKAAID VVCNPLGKSG GALIQQFMIL 540
  541 SFGSLANSTP YLGMILLVIV TAWLAAAKSL EGQFNSLRSE EELEKEMERA SSVKIPVVSQ 600
  601 DESGNGSLGE SPSSSPEKSA PTNL