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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYVM1_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLFLRRAK PLFVSCCSAT HSRSSFLSPT LTNQLVRSFH GSRTMSESEK KILTEEELER  60
   61 KKKKEEKAKE KELKKQKALE KERLAELKAK QAKDGTNVPK KSAKKSSKRD ASEENPEDFV 120
  121 DPETPLGERK RLSSQMAKQY SPATVEKSWY AWWEKSDLFK ADAKSSKPPF VIVLPPPNVT 180
  181 GALHIGHALT SAIEDTIIRW KRMSGYNALW VPGVDHAGIA TQVVVEKKIM RDRGMTRHDV 240
  241 GREEFVKEVW KWKNQYGGTI LTQLRRLGAS LDWSRECFTM DEQRSKAVTE AFVRLYKEGL 300
  301 IYRDIRLVNW DCILRTAISD VEVEYIDIKE KTLLKVPGYE KPVEFGLLTS FAYPLEGGLG 360
  361 EVIVATTRVE TMLGDTAIAI HPDDARYKHL HGKFAVHPFN GRKLPIICDG ILVDPNFGTG 420
  421 CVKITPAHDP NDCEVGKRHK LEFINIFTDD GKINTNGGSD FAGMPRFAAR EAVVEALQKQ 480
  481 GLYRGAKNNE MRLGLCSRTN DVIEPMIKPQ WYVNCSMIGK EALDVAITDE NKKLEFVPKQ 540
  541 YTAEWRRWLE NIRDWCISRQ LWWGHRIPAW YATLEEDQLK EVGAYSDHWV VARTEDDARE 600
  601 EAAQKFLGKK FELTRDPDVL DTWFSSGLFP LSVLGWPDVT DDFKAFYPTS VLETGHDILF 660
  661 FWVARMVMMG MKLGGEVPFS KVYFHPMIRD AHGRKMSKSL GNVIDPLEVI NGVTLEGLHK 720
  721 RLEEGNLDPK EVIVAKEGQV KDFPNGIPEC GTDALRFALV SYTAQSDKIN LDILRVVGYR 780
  781 QWCNKLWNAV RFAMMKLGDG YTPPQTLSPE TMPFSCQWIL SVLNKAISKT VVSLDAFEFS 840
  841 DAANTIYAWW QYQFCDVYIE AIKPYFAGDN PTFASERAHA QHALWISLET GLRLLHPFMP 900
  901 FVTEELWQRL PAPKDTERKA SIMICDYPSA IENWSNEKVE SEMDTVLATV KCMRALRAGL 960
  961 LEKQKNERLP AFALCENNVT SEIVKSHELE IRTLANLSSL EVVSKGQHAA PPGSSVETVN1020
 1021 ENLKVYLEVD GAINTEAEQE KIRNKIGELQ KQKEKLQKMM SVSTYEEKVP ANIKEDNANK1080
 1081 LAKILQEFDF FEKESARLAA ETSNSGNQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle