YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT41_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.99
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	121	0.75
Transmembrane Helix	122	141	0.93
Cytoplasmic	142	146	0.86
Transmembrane Helix	147	167	0.92
Non-Cytoplasmic	168	174	0.82
Transmembrane Helix	175	195	0.92
Cytoplasmic	196	202	0.68
Transmembrane Helix	203	225	0.84
Non-Cytoplasmic	226	252	0.92
Transmembrane Helix	253	274	0.86
Cytoplasmic	275	282	0.86
Transmembrane Helix	283	303	0.88
Non-Cytoplasmic	304	332	0.87
Transmembrane Helix	333	355	0.78
Cytoplasmic	356	368	0.74
Transmembrane Helix	369	388	0.87
Non-Cytoplasmic	389	403	0.70
Transmembrane Helix	404	423	0.90
Cytoplasmic	424	431	0.50
Transmembrane Helix	432	448	0.73
Non-Cytoplasmic	449	469	0.47
Transmembrane Helix	470	493	0.87
Cytoplasmic	494	685	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYASLSVKD LTSLVSRSGT GSSSSLKPPG QTRPVKVIPL QHPDTSNEAR PPSIPFDDIF  60
   61 SGWTAKIKRM RLVDWIDTLF PCFRWIRTYR WSEYFKLDLM AGITVGIMLV PQAMSYAKLA 120
  121 GLPPIYGLYS SFVPVFVYAI FGSSRQLAIG PVALVSLLVS NALGGIADTN EELHIELAIL 180
  181 LALLVGILEC IMGLLRLGWL IRFISHSVIS GFTSASAIVI GLSQIKYFLG YSIARSSKIV 240
  241 PIVESIIAGA DKFQWPPFVM GSLILVILQV MKHVGKAKKE LQFLRAAAPL TGIVLGTTIA 300
  301 KVFHPPSISL VGEIPQGLPT FSFPRSFDHA KTLLPTSALI TGVAILESVG IAKALAAKNR 360
  361 YELDSNSELF GLGVANILGS LFSAYPATGS FSRSAVNNES EAKTGLSGLI TGIIIGCSLL 420
  421 FLTPMFKYIP QCALAAIVIS AVSGLVDYDE AIFLWRVDKR DFSLWTITST ITLFFGIEIG 480
  481 VLVGVGFSLA FVIHESANPH IAVLGRLPGT TVYRNIKQYP EAYTYNGIVI VRIDSPIYFA 540
  541 NISYIKDRLR EYEVAVDKYT NRGLEVDRIN FVILEMSPVT HIDSSAVEAL KELYQEYKTR 600
  601 DIQLAISNPN KDVHLTIARS GMVELVGKEW FFVRVHDAVQ VCLQYVQSSN LEDKHLSFTR 660
  661 RYGGSNNNSS SSNALLKEPL LSVEK