YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT35_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.94
Transmembrane Helix	82	103	0.61
Non-Cytoplasmic	104	118	0.60
Transmembrane Helix	119	143	0.77
Cytoplasmic	144	156	0.69
Transmembrane Helix	157	179	0.89
Non-Cytoplasmic	180	186	0.61
Transmembrane Helix	187	209	0.82
Cytoplasmic	210	265	0.66
Transmembrane Helix	266	288	0.94
Non-Cytoplasmic	289	321	0.81
Transmembrane Helix	322	342	0.89
Cytoplasmic	343	359	0.70
Transmembrane Helix	360	379	0.84
Non-Cytoplasmic	380	401	0.58
Transmembrane Helix	402	436	0.76
Cytoplasmic	437	451	0.62
Transmembrane Helix	452	473	0.82
Non-Cytoplasmic	474	515	0.67
Transmembrane Helix	516	535	0.60
Cytoplasmic	536	634	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTITSSTS SPKGRGVNFS TPRGFGSKFK SKCKETFFPD DPFKPISQEP NRLLKTKKLL  60
   61 EYFVPIFEWL PKYDMQKLKY DVLAGITITS LAVPQGISYA KLASIPPIIG LYSSFVPPFV 120
  121 YAVFGSSNNL AVGTVAACSL LIAETFGEEM IKNEPELYLH LIFTATLITG LFQFAMGFLR 180
  181 LGILVDFLSH STITGFMGGT AIIILLQQLK GIFGLVHFTH KTDVVSVLHS ILDNRAEWKW 240
  241 QSTLAGVCFL VFLQSTRYIK QRYPKLFWVS AMGPMVVVVV GCVVAYLVKG TAHGIATVGP 300
  301 LKKGLNPPSI QLLNFDSKYL GMVFKAGIVT GLIALAEGIA IGRSFAVMKN EQTDGNKEMI 360
  361 AFGLMNVIGS FTSCYLTTGP FSKTAVNYNA GTKTPMSNVV MGVCMMLVLL FLAPLFSYTP 420
  421 LVGLSAIIMS AMLGLINYEE MYHLFKVDKF DFLVCMSAFF GVSFLSMDYG LIISVGFSIV 480
  481 RALLYVARPS TCKLGRIPNS VMFRDIEQYP ASEEMLGYII LQLGSPVFFA NSTYVRERIL 540
  541 RWIRDEPEAI EFLLLDLSGV STIDMTGMET LLEIQRILGS KNIKMVIINP RFEVLEKMML 600
  601 SHFVEKIGKE YMFLSIDDAV QACRFNLTTT KPEV