YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT33_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.84
Transmembrane Helix	70	85	0.39
Non-Cytoplasmic	86	90	0.35
Transmembrane Helix	91	112	0.56
Cytoplasmic	113	117	0.50
Transmembrane Helix	118	136	0.66
Non-Cytoplasmic	137	145	0.78
Transmembrane Helix	146	168	0.87
Cytoplasmic	169	179	0.60
Transmembrane Helix	180	198	0.89
Non-Cytoplasmic	199	226	0.84
Transmembrane Helix	227	245	0.94
Cytoplasmic	246	254	0.79
Transmembrane Helix	255	277	0.93
Non-Cytoplasmic	278	308	0.90
Transmembrane Helix	309	330	0.80
Cytoplasmic	331	348	0.77
Transmembrane Helix	349	370	0.77
Non-Cytoplasmic	371	382	0.56
Transmembrane Helix	383	402	0.92
Cytoplasmic	403	410	0.53
Transmembrane Helix	411	433	0.90
Non-Cytoplasmic	434	440	0.60
Transmembrane Helix	441	469	0.82
Cytoplasmic	470	631	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVHKVVAPP HKSTVAKLKT KLKETFFPDD PLRQFRGQPN RTKLIRAAQY IFPILQWCPE  60
   61 YSFSLLKSDV VSGLTIASLA IPQGISYAKL ANLPPIVGLY SSFVPPLVYA VLGSSRDLAV 120
  121 GPVSIASLIL GSMLRQQVSP VDDPVLFLQL AFSSTFFAGL FQASLGILRL GFIIDFLSKA 180
  181 TLIGFMGGAA IIVSLQQLKG LLGITHFTKH MSVVPVLSSV FQHTNEWSWQ TIVMGVCFLL 240
  241 FLLSTRHLSM KKPKLFWVSA GAPLLSVIVS TLLVFVFRAE RHGISVIGKL PEGLNPPSWN 300
  301 MLQFHGSHLA LVAKTGLVTG IVSLTEGIAV GRTFAALKNY HVDGNKEMIA IGLMNVVGSA 360
  361 TSCYVTTGAF SRSAVNNNAG AKTAVSNIVM SVTVMVTLLF LMPLFEYTPN VVLGAIIVTA 420
  421 VIGLIDLPAA CHIWKIDKFD FLVMLCAFFG VIFLSVQNGL AIAVGLSLFK ILMQVTRPKM 480
  481 VIMGNIPGTD IYRDLHHYKE AQRIPGFLVL SIESPVNFAN SNYLTERTSR WIEECEEEEA 540
  541 QEKHSSLQFL ILEMSAVSGV DTNGVSFFKE LKKTTAKKDI ELVFVNPLSE VVEKLQRADE 600
  601 QKEFMRPEFL FLTVAEAVAS LSLKGPSLSN V