YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT22_ARATH, ST2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.95
Transmembrane Helix	92	113	0.66
Non-Cytoplasmic	114	139	0.64
Transmembrane Helix	140	156	0.74
Cytoplasmic	157	166	0.54
Transmembrane Helix	167	192	0.79
Non-Cytoplasmic	193	197	0.46
Transmembrane Helix	198	220	0.84
Cytoplasmic	221	227	0.45
Transmembrane Helix	228	246	0.43
Non-Cytoplasmic	247	251	0.62
Transmembrane Helix	252	271	0.92
Cytoplasmic	272	277	0.84
Transmembrane Helix	278	299	0.93
Non-Cytoplasmic	300	334	0.88
Transmembrane Helix	335	358	0.83
Cytoplasmic	359	371	0.86
Transmembrane Helix	372	391	0.91
Non-Cytoplasmic	392	400	0.61
Transmembrane Helix	401	421	0.79
Cytoplasmic	422	426	0.57
Transmembrane Helix	427	448	0.83
Non-Cytoplasmic	449	465	0.63
Transmembrane Helix	466	491	0.89
Cytoplasmic	492	658	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIELQNHQS HHEEASPAEE PMSRWLINTP EPPSMWQELI GYIRTNVLAK KKHKRNKTKN  60
   61 SSSNLVYSCL KSAFPILSWG RQYKLNLFKK DLMAGLTLAS LCIPQSIGYA NLAGLDPEYG 120
  121 LYTSVVPPLI YSTMGTSREL AIGPVAVVSL LLSSMVRDLQ DPVTDPIAYR KIVFTVTFFA 180
  181 GAFQAIFGLF RLGFLVDFLS HAALVGFMAG AAIVIGLQQL KGLFGLTHFT NKTDVVSVLS 240
  241 SVFHSLHHPW QPLNFVIGSS FLIFILLARF IGKRNNKLFW IPAMAPLISV VLATLIVYLS 300
  301 NAESRGVKIV KHIKPGFNQL SVNQLQFKSP HLGQIAKIGL ISAIIALTEA IAVGRSFATI 360
  361 KGYRLDGNKE MMAMGFMNIA GSLSSCYVAT GSFSRTAVNF SAGCETVVSN IVMAITVMIS 420
  421 LEVLTRFLYF TPTAILASII LSALPGLIDV SGALHIWKLD KLDFLVLIAA FFGVLFASVE 480
  481 IGLLLAVGIS FARIMLSSIR PSIEALGRLS KTDIFGDINQ YPMANKTAGL LTLRISSPLL 540
  541 CFANANFIRD RILNSVQEIE GEENEQEVLK ENGLQVVILD MSCVMGVDTS GVFALEELHQ 600
  601 ELASNDIRLV IASPRWRVLH KLKRAKLDEK IKTENIYMTV GEAVDIYVRA RSTSHELC