YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	118	0.79
Transmembrane Helix	119	140	0.75
Non-Cytoplasmic	141	160	0.66
Transmembrane Helix	161	183	0.75
Cytoplasmic	184	198	0.58
Transmembrane Helix	199	217	0.87
Non-Cytoplasmic	218	224	0.48
Transmembrane Helix	225	244	0.90
Cytoplasmic	245	250	0.53
Transmembrane Helix	251	270	0.57
Non-Cytoplasmic	271	277	0.82
Transmembrane Helix	278	298	0.90
Cytoplasmic	299	304	0.91
Transmembrane Helix	305	326	0.94
Non-Cytoplasmic	327	361	0.93
Transmembrane Helix	362	385	0.85
Cytoplasmic	386	397	0.92
Transmembrane Helix	398	418	0.92
Non-Cytoplasmic	419	425	0.75
Transmembrane Helix	426	448	0.87
Cytoplasmic	449	454	0.79
Transmembrane Helix	455	475	0.93
Non-Cytoplasmic	476	493	0.82
Transmembrane Helix	494	518	0.89
Cytoplasmic	519	677	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKERDSESFE SLSHQVLPNT SNSTHMIQMA MANSGSSAAA QAGQDQPDRS KWLLDCPEPP  60
   61 SPWHELKRQV KGSFLTKAKK FKSLQKQPFP KQILSVLQAI FPIFGWCRNY KLTMFKNDLM 120
  121 AGLTLASLCI PQSIGYATLA KLDPQYGLYT SVVPPLIYAL MGTSREIAIG PVAVVSLLIS 180
  181 SMLQKLIDPE TDPLGYKKLV LTTTFFAGIF QASFGLFRLG FLVDFLSHAA IVGFMGGAAI 240
  241 VIGLQQLKGL LGITNFTTNT DIVSVLRAVW RSCQQQWSPH TFILGCSFLS FILITRFIGK 300
  301 KYKKLFWLPA IAPLIAVVVS TLMVFLTKAD EHGVKTVRHI KGGLNPMSIQ DLDFNTPHLG 360
  361 QIAKIGLIIA IVALTEAIAV GRSFAGIKGY RLDGNKEMVA IGFMNVLGSF TSCYAATGSF 420
  421 SRTAVNFAAG CETAMSNIVM AVTVFVALEC LTRLLYYTPI AILASIILSA LPGLININEA 480
  481 IHIWKVDKFD FLALIGAFFG VLFASVEIGL LVAVVISFAK IILISIRPGI ETLGRMPGTD 540
  541 TFTDTNQYPM TVKTPGVLIF RVKSALLCFA NASSIEERIM GWVDEEEEEE NTKSNAKRKI 600
  601 LFVVLDMSSL INVDTSGITA LLELHNKLIK TGVELVIVNP KWQVIHKLNQ AKFVDRIGGK 660
  661 VYLTIGEALD ACFGLKV