YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.92
Transmembrane Helix	95	113	0.56
Non-Cytoplasmic	114	144	0.53
Transmembrane Helix	145	163	0.77
Cytoplasmic	164	173	0.57
Transmembrane Helix	174	197	0.81
Non-Cytoplasmic	198	202	0.45
Transmembrane Helix	203	225	0.85
Cytoplasmic	226	237	0.44
Transmembrane Helix	238	252	0.36
Non-Cytoplasmic	253	253	0.49
Transmembrane Helix	254	276	0.84
Cytoplasmic	277	282	0.73
Transmembrane Helix	283	304	0.93
Non-Cytoplasmic	305	339	0.76
Transmembrane Helix	340	363	0.80
Cytoplasmic	364	375	0.71
Transmembrane Helix	376	398	0.78
Non-Cytoplasmic	399	406	0.55
Transmembrane Helix	407	430	0.85
Cytoplasmic	431	438	0.50
Transmembrane Helix	439	462	0.88
Non-Cytoplasmic	463	472	0.54
Transmembrane Helix	473	497	0.88
Cytoplasmic	498	656	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARAHPVDD DGEISPVERS SPRQANTPYV HKVEVPPKQN LFNEFMYTFK ETFFHDDPLR  60
   61 HFKDQSKSKK LMLGIQSVFP VIEWGRKYNL KLFRGDLIAG LTIASLCIPQ DIGYAKLASL 120
  121 DPKYGLYSSF VPPLVYACMG SSKDIAIGPV AVVSLLLGTL LRAEIDPNTN PNEYLRLAFT 180
  181 STFFAGVTQA ALGFFRLGFL IDFLSHAAVV GFMGGAAITI ALQQLKGFLG INKFTKKTDI 240
  241 IAVLSSVISS AHHGWNWQTI LISASFLIFL LISKFIGKRN KKLFWIPAIA PLVSVIISTF 300
  301 FVYITRADKK GVQIVKHLDK GLNPSSLRLI YFSGDYLLKG FRIGVVSGMV ALTEAVAIGR 360
  361 TFAAMKDYQI DGNKEMVALG AMNVIGSMTS CYVSTGSFSR SAVNFMAGCQ TAVSNIIMSI 420
  421 VVLLTLLFLT PLFKYTPNAI LAAIIINAVI PLVDVNATIL IFKIDKLDFV ACMGAFFGVI 480
  481 FVSVEIGLLI AVGISFAKIL LQVTRPRTAI LGKIPGTSVY RNINQYPEAT RIPGVLTIRV 540
  541 DSAIYFSNSN YVRERIQRWL TDEEEMVEAA RLPRIQFLII EMSPVTDIDT SGIHALEDLY 600
  601 KSLQKRDIQL VLANPGPPVI NKLHVSHFAD LIGHDKIFLT VAEAVDSCSP KLSDEV