YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUT11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	136	0.74
Transmembrane Helix	137	157	0.89
Non-Cytoplasmic	158	165	0.43
Transmembrane Helix	166	187	0.88
Cytoplasmic	188	194	0.35
Transmembrane Helix	195	217	0.81
Non-Cytoplasmic	218	245	0.56
Transmembrane Helix	246	268	0.84
Cytoplasmic	269	274	0.63
Transmembrane Helix	275	297	0.93
Non-Cytoplasmic	298	332	0.64
Transmembrane Helix	333	356	0.84
Cytoplasmic	357	367	0.65
Transmembrane Helix	368	390	0.82
Non-Cytoplasmic	391	398	0.49
Transmembrane Helix	399	422	0.81
Cytoplasmic	423	430	0.45
Transmembrane Helix	431	454	0.88
Non-Cytoplasmic	455	463	0.50
Transmembrane Helix	464	489	0.87
Cytoplasmic	490	649	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTINPPDG GGSGARNPPV VRQRVLAPPK AGLLKDIKSV VEETFFHDAP LRDFKGQTPA  60
   61 KKALLGIQAV FPIIGWAREY TLRKFRGDLI AGLTIASLCI PQDIGYAKLA NVDPKYGLYS 120
  121 SFVPPLIYAG MGSSRDIAIG PVAVVSLLVG TLCQAVIDPK KNPEDYLRLV FTATFFAGIF 180
  181 QAGLGFLRLG FLIDFLSHAA VVGFMGGAAI TIALQQLKGF LGIKTFTKKT DIVSVMHSVF 240
  241 KNAEHGWNWQ TIVIGASFLT FLLVTKFIGK RNRKLFWVPA IAPLISVIIS TFFVFIFRAD 300
  301 KQGVQIVKHI DQGINPISVH KIFFSGKYFT EGIRIGGIAG MVALTEAVAI ARTFAAMKDY 360
  361 QIDGNKEMIA LGTMNVVGSM TSCYIATGSF SRSAVNFMAG VETAVSNIVM AIVVALTLEF 420
  421 ITPLFKYTPN AILAAIIISA VLGLIDIDAA ILIWRIDKLD FLACMGAFLG VIFISVEIGL 480
  481 LIAVVISFAK ILLQVTRPRT TVLGKLPNSN VYRNTLQYPD AAQIPGILII RVDSAIYFSN 540
  541 SNYVRERASR WVREEQENAK EYGMPAIRFV IIEMSPVTDI DTSGIHSIEE LLKSLEKQEI 600
  601 QLILANPGPV VIEKLYASKF VEEIGEKNIF LTVGDAVAVC STEVAEQQT