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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SQD1_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF  60
   61 RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT ALHLSKKNYE VCIVDNLVRR 120
  121 LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF 180
  181 GEQRSAPYSM IDRSRAVYTQ HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE 240
  241 EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT 300
  301 DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI 360
  361 AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD VKKMTVPNPR VEAEEHYYNA 420
  421 KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle