YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5D1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADNAYLMQ FVDETSFYNR IVLSHLLPAN LWEPLPHFLQ TWLRNYLAGT LLYFISGFLW  60
   61 CFYIYYLKIN VYLPKDAIPT IKAMRLQMFV AMKAMPWYTL LPTVSESMIE RGWTKCFASI 120
  121 GEFGWILYFV YIAIYLVFVE FGIYWMHREL HDIKPLYKYL HATHHIYNKQ NTLSPFAGLA 180
  181 FHPVDGILQA VPHVIALFIV PIHFTTHIGL LFMEAIWTAN IHDCIHGNIW PVMGAGYHTI 240
  241 HHTTYKHNYG HYTIWMDWMF GSLRDPLLEE DDNKDSFKKA E

Type	Start	End	Confidence
Cytoplasmic	1	45	0.50
Transmembrane Helix	46	67	0.91
Non-Cytoplasmic	68	82	0.43
Transmembrane Helix	83	104	0.52
Cytoplasmic	105	122	0.44
Transmembrane Helix	123	145	0.83
Non-Cytoplasmic	146	189	0.58
Transmembrane Helix	190	211	0.77
Cytoplasmic	212	281	0.74