YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUSH_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSFLRIPI PSRVFWYPTR LIRVTPALLR FSSSAAFQPS STSLSPPSSD NFLADKWESY  60
   61 RKKKVVIRIG YVGTDYRGLQ IQRDDPSIKT IEGELEVAIY KAGGIRDSNY GDLHKIGWAR 120
  121 SSRTDKGVHS LATSISLKME IPETAWKDDP QGTVLAKCIS KHLPENIRVF SVLPSNRRFD 180
  181 PRRECTLRKY SYLLPVDVLG IKNSFTSDEI DYHITDFNEI LKEFEGEYPF HNYTQRSRYR 240
  241 RKSEQKIKQR NGRPPREPKS IKASESEFRE ENHIEIGEEE EEKEVDGESD EHVVTPDSDN 300
  301 SQVYSRAKWL YEPDETDKIS GAHFRKVFRC RSGKLENSLG FGFVEISIWG ESFMLHQIRK 360
  361 MIGTAVAVKR ELLPRDIIRL SLNKFTRIVL PLAPSEVLIL RGNSFEVRRL PERPGMEATG 420
  421 ESEEVEKEIE EFYRAVMVPQ VSIFLDSEKS PWKEWVDHLD RNDGLIDEEL EDVRKGWEEW 480
  481 KAAKPWMNLK KTEDDEEALS SVSVPIHQAL

Type	Start	End	Confidence
Signal Peptide	1	35	0.49
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	510	0.99