YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	112	0.88
Transmembrane Helix	113	134	0.85
Non-Cytoplasmic	135	156	0.81
Transmembrane Helix	157	178	0.82
Cytoplasmic	179	199	0.93
Transmembrane Helix	200	222	0.93
Non-Cytoplasmic	223	229	0.84
Transmembrane Helix	230	252	0.89
Cytoplasmic	253	349	0.98
Transmembrane Helix	350	368	0.91
Non-Cytoplasmic	369	389	0.82
Transmembrane Helix	390	411	0.87
Cytoplasmic	412	431	0.92
Transmembrane Helix	432	453	0.92
Non-Cytoplasmic	454	475	0.87
Transmembrane Helix	476	497	0.85
Cytoplasmic	498	511	0.85
Transmembrane Helix	512	534	0.89
Non-Cytoplasmic	535	554	0.93
Transmembrane Helix	555	575	0.95
Cytoplasmic	576	585	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSIEEEARP LIEEGLILQE VKLYAEDGSV DFNGNPPLKE KTGNWKACPF ILGNECCERL  60
   61 AYYGIAGNLI TYLTTKLHQG NVSAATNVTT WQGTCYLTPL IGAVLADAYW GRYWTIACFS 120
  121 GIYFIGMSAL TLSASVPALK PAECIGDFCP SATPAQYAMF FGGLYLIALG TGGIKPCVSS 180
  181 FGADQFDDTD SRERVRKASF FNWFYFSINI GALVSSSLLV WIQENRGWGL GFGIPTVFMG 240
  241 LAIASFFFGT PLYRFQKPGG SPITRISQVV VASFRKSSVK VPEDATLLYE TQDKNSAIAG 300
  301 SRKIEHTDDC QYLDKAAVIS EEESKSGDYS NSWRLCTVTQ VEELKILIRM FPIWASGIIF 360
  361 SAVYAQMSTM FVQQGRAMNC KIGSFQLPPA ALGTFDTASV IIWVPLYDRF IVPLARKFTG 420
  421 VDKGFTEIQR MGIGLFVSVL CMAAAAIVEI IRLHMANDLG LVESGAPVPI SVLWQIPQYF 480
  481 ILGAAEVFYF IGQLEFFYDQ SPDAMRSLCS ALALLTNALG NYLSSLILTL VTYFTTRNGQ 540
  541 EGWISDNLNS GHLDYFFWLL AGLSLVNMAV YFFSAARYKQ KKASS