YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POT7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	106	0.89
Transmembrane Helix	107	127	0.54
Non-Cytoplasmic	128	141	0.59
Transmembrane Helix	142	164	0.66
Cytoplasmic	165	232	0.92
Transmembrane Helix	233	252	0.92
Non-Cytoplasmic	253	274	0.80
Transmembrane Helix	275	291	0.93
Cytoplasmic	292	299	0.75
Transmembrane Helix	300	322	0.90
Non-Cytoplasmic	323	347	0.94
Transmembrane Helix	348	367	0.96
Cytoplasmic	368	376	0.73
Transmembrane Helix	377	400	0.87
Non-Cytoplasmic	401	417	0.80
Transmembrane Helix	418	438	0.84
Cytoplasmic	439	470	0.94
Transmembrane Helix	471	494	0.88
Non-Cytoplasmic	495	500	0.87
Transmembrane Helix	501	523	0.88
Cytoplasmic	524	528	0.75
Transmembrane Helix	529	550	0.91
Non-Cytoplasmic	551	556	0.76
Transmembrane Helix	557	576	0.94
Cytoplasmic	577	597	0.90
Transmembrane Helix	598	615	0.47
Non-Cytoplasmic	616	623	0.40
Transmembrane Helix	624	649	0.68
Cytoplasmic	650	858	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEESSMEGS EKEEIDSSGG GFGDMASMDS IESRWVIQDD DDSEIGVDDD NDGFDGTGLE  60
   61 SDEDEIPEHR LIRTGPRVDS FDVEALEVPG APRNDYEDLT VGRKVLLAFQ TLGVVFGDVG 120
  121 TSPLYTFSVM FSKSPVQEKE DVIGALSLVL YTLLLVPLIK YVLVVLWAND DGEGGTFALY 180
  181 SLISRHAKIS LIPNQLRSDT RISSFRLKVP CPELERSLKL KEKLENSLIL KKILLVLVLA 240
  241 GTSMVIADGV VTPAMSVMSA VGGLKVGVDV VEQDQVVMIS VAFLVILFSL QKYGTSKMGL 300
  301 VVGPALLIWF CSLAGIGIYN LIKYDSSVYR AFNPVHIYYF FKRNSINAWY ALGGCILCAT 360
  361 GSEALFADLC YFSVRSVQLT FVCLVLPCLM LGYMGQAAYL MENHADASQA FFSSVPGSAF 420
  421 WPVLFIANIA ALIASRTMTT ATFSCIKQST ALGCFPRLKI IHTSRKFMGQ IYIPVLNWFL 480
  481 LAVCLVVVCS ISSIDEIGNA YGMAELGVMM TTTILVTLIM LLIWQINIVI VIAFLVVFLG 540
  541 VELVFFSSVI ASVGDGSWII LVFAVIMFGI MYIWNYGSKL RYETEVEQKL SMDLMRELGC 600
  601 NLGTIRAPGI GLLYNELVKG VPAIFGHFLT TLPAIHSMVI FVCIKYVPVP VVPQNERFLF 660
  661 RRVCTKSYHL FRCIARYGYK DARKETHQAF EQLLIESLEK FIRREAQERS LESDGNDDSD 720
  721 SEEDFPGSRV VIGPNGSMYS MGVPLLSEYR DLNKPIMEMN TSSDHTNHHP FDTSSDSSVS 780
  781 EAEQSLEREL SFIHKAKESG VVYLLGHGDI RARKDSWFIK KLVINYFYTF LRKNCRRGIA 840
  841 NLSVPQSHLM QVGMTYMV