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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PMA10_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDLDKPLL DPDTFNRKGI DLGILPLEEV FEYLRTSPQG LLSGDAEERL KIFGPNRLEE  60
   61 KQENRFVKFL GFMWNPLSWV MEAAALMAIA LANSQSLGPD WEDFTGIVCL LLINATISFF 120
  121 EENNAGNAAA ALMARLALKT RVLRDGQWQE QDASILVPGD IISIKLGDII PADARLLEGD 180
  181 PLKIDQSVLT GESLPVTKKK GEQVFSGSTC KQGEIEAVVI ATGSTTFFGK TARLVDSTDV 240
  241 TGHFQQVLTS IGNFCICSIA VGMVLEIIIM FPVQHRSYRI GINNLLVLLI GGIPIAMPTV 300
  301 LSVTLAIGSH RLSQQGAITK RMTAIEEMAG MDVLCCDKTG TLTLNSLTVD KNLIEVFVDY 360
  361 MDKDTILLLA GRASRLENQD AIDAAIVSML ADPREARANI REIHFLPFNP VDKRTAITYI 420
  421 DSDGKWYRAT KGAPEQVLNL CQQKNEIAQR VYAIIDRFAE KGLRSLAVAY QEIPEKSNNS 480
  481 PGGPWRFCGL LPLFDPPRHD SGETILRALS LGVCVKMITG DQLAIAKETG RRLGMGTNMY 540
  541 PSSSLLGHNN DEHEAIPVDE LIEMADGFAG VFPEHKYEIV KILQEMKHVV GMTGDGVNDA 600
  601 PALKKADIGI AVADATDAAR SSADIVLTDP GLSVIISAVL TSRAIFQRMR NYTVYAVSIT 660
  661 IRIVLGFTLL ALIWEYDFPP FMVLIIAILN DGTIMTISKD RVRPSPTPES WKLNQIFATG 720
  721 IVIGTYLALV TVLFYWIIVS TTFFEKHFHV KSIANNSEQV SSAMYLQVSI ISQALIFVTR 780
  781 SRGWSFFERP GTLLIFAFIL AQLAATLIAV YANISFAKIT GIGWRWAGVI WLYSLIFYIP 840
  841 LDVIKFVFHY ALSGEAWNLV LDRKTAFTYK KDYGKDDGSP NVTISQRSRS AEELRGSRSR 900
  901 ASWIAEQTRR RAEIARLLEV HSVSRHLESV IKLKQIDQRM IRAAHTV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle