YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OXA1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.19
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRQTLSIR SRLFARRNQP VYHIIPRESD HERDSFCQET SQRSYHSFLH QRSVNNSDFS  60
   61 KVSGGSLHLP LAPTSGFAFY RYMSSAPGVG SEKIGVMSDI AEVITDSTLQ DVPAQAAAAV 120
  121 SEVTLAAADS FFPIAALQQC IDMVHTFTGF EWWASIVVAT ILIRSSTVPL LIKQMKDTTK 180
  181 LALMRPRLES IREEMQNKGM DSVTMAEGQK KMKNLFKEYG VTPFTPMKGM FIQGPLFICF 240
  241 FLAIRNMAEK VPSFQTGGAL WFTDLTTPDS LYILPVITGL TFLITVECNA QEGMEGNPMA 300
  301 GTVKTVCRVF ALLTVPMTMS FPQAIFCYWI TSNLFSLMYG LVIKRPQVKK MLRIPDLPPP 360
  361 PPGQQPSFDL FSALKKMKAM TQDHTQNQIE PPSPVNPRLS STSLSPVSKR LKALESQVKG 420
  421 RKKNSSKKK

Type	Start	End	Confidence
Cytoplasmic	1	122	0.63
Transmembrane Helix	123	137	0.19
Non-Cytoplasmic	138	151	0.48
Transmembrane Helix	152	168	0.61
Cytoplasmic	169	228	0.62
Transmembrane Helix	229	248	0.76
Non-Cytoplasmic	249	269	0.60
Transmembrane Helix	270	290	0.66
Cytoplasmic	291	299	0.45
Transmembrane Helix	300	317	0.42
Non-Cytoplasmic	318	323	0.59
Transmembrane Helix	324	343	0.87
Cytoplasmic	344	429	0.88